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Report for CCDS84805.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
84805.1 Public Mus musculus 4 Nipal3 23 108 98 CCDS HistoryNCBI Gene:74552Re-query CCDS DB by CCDS ID:84805.1Re-query CCDS DB by GeneID:74552See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 21, NCBI annotation release 106, Ensembl annotation release 86

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 84805.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000105856.8 ENSMUSP00000101482.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000105856.8Link to Ensembl Protein Viewer:ENSMUSP00000101482.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000105856Re-query CCDS DB by Protein ID:ENSMUSP00000101482
Original member Current member EBI ENSMUST00000183807.7 ENSMUSP00000139088.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000183807.7Link to Ensembl Protein Viewer:ENSMUSP00000139088.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000183807Re-query CCDS DB by Protein ID:ENSMUSP00000139088
Original member Current member NCBI NM_001347220.1 NP_001334149.1 Accepted alive Link to Nucleotide Sequence:NM_001347220.1Link to Protein Sequence:NP_001334149.1Re-query CCDS DB by Nucleotide ID:NM_001347220Re-query CCDS DB by Protein ID:NP_001334149Link to BLAST:NP_001334149.1

Chromosomal Locations for CCDS 84805.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 135447182 135447405 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 135463786 135463880 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 135465688 135465751 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 135466847 135466935 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 135468506 135468641 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 135471885 135471981 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 135474324 135474469 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 135477433 135477492 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 135479536 135479707 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 135482472 135482540 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 135490933 135491037 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1257 nt):
ATGGACGGAGCCCACAGTGCAGGTCTGCAGCTGCAGCCACTCCCACCCACCAGCGGCGCCACCTCCACGA
GCCTGAGCAGCAGCGAGGGCTCCTTCTCCTACAAGGAAAACTTGATCGGAGCACTCTTGGCCATTTTTGG
GCACCTGGTGGTCAGCATTGCCCTTAACCTGCAGAAATACTGCCACATCCGCCTAGCAGGCTCCAAGGAC
CCACGGGCCTACTTCAAGACCAAGACATGGTGGCTGGGGCTGCTCCTGCTGCTACTGGGGGAACTGGGCG
TGTTCGCCTCCTACGCCTTTGCTCCACTGTCGCTCATCGTGCCCCTCAGTGCCGTCTCCGTGATAGCAAG
CGCCATCATCGGAATCATATTCATCAAGGAAAAATGGAAACCTAAGGACTTTGTGAGACGCTATGTCTTG
TCCTTTGTTGGCTGCGGCTTGGCCATCGTGGGCACCTACCTGCTAGTGACATTTGCACCCAACAGTCATG
AGAAGATGACAGGCGAGAACATCGCCAGGCACCTTGTGAGCTGGCCGTTTCTCCTGTACATGCTGGTGGC
GATCGTCCTGTTCTGCCTGCTGCTCTACTTCTACAAGGAGAGGAACGCCAACAGCATCGTTGTGATTCTC
CTCCTGGTGGCCCTGCTTGGTTCCATGACAGTGGTGACGGTCAAGGCCGTGTCAGGGATGCTGGTGCTGT
CCATCCAAGGCAACCTGCAGCTGGACTACCCCATCTTCTACGTGATGTTTGTGTGCATGGTGGCCACCGC
CATCTATCAGGCCACGTTTCTGAGTGAAGCCTCCCAGATCTATGACTCCTCCTTGATTGCCAGCGTTGGC
TACATCCTGTCCACAACAGCGGCCATCACAGCAGGTGCGATCTTCTACCTGGACTTCCTTGGGGAGGAAG
CTCTGCACATCTGTATGTTTGCACTGGGGTGCCTCATCGCCTTCTTGGGCGTGTTCCTAATCACTCGAAA
CAGAAAGAAGGCCATTCCGTTCGAGCCCTATATTTCCATGGACGCCATGCCAGGTGTGTTTGATCACAGA
AATGGAGCTGGGCTAGTAGCCCCTGTGCTGACCATACAGCGTTCCAGTGCCAGCCACATCCACTGTGGAG
GATGCTCAGGAAGCTGGGGAGCCATGTCTTATTACACTGCCAAAAAGTTACTGAATATAATTCTATCAAG
ATGCTCAAGACGTGGGGCTGGTGGCTGGAGAGAAGGCACCAAGTTTAAGAGAGCTTACTGCTCTTGA

Translation (418 aa):
MDGAHSAGLQLQPLPPTSGATSTSLSSSEGSFSYKENLIGALLAIFGHLVVSIALNLQKYCHIRLAGSKD
PRAYFKTKTWWLGLLLLLLGELGVFASYAFAPLSLIVPLSAVSVIASAIIGIIFIKEKWKPKDFVRRYVL
SFVGCGLAIVGTYLLVTFAPNSHEKMTGENIARHLVSWPFLLYMLVAIVLFCLLLYFYKERNANSIVVIL
LLVALLGSMTVVTVKAVSGMLVLSIQGNLQLDYPIFYVMFVCMVATAIYQATFLSEASQIYDSSLIASVG
YILSTTAAITAGAIFYLDFLGEEALHICMFALGCLIAFLGVFLITRNRKKAIPFEPYISMDAMPGVFDHR
NGAGLVAPVLTIQRSSASHIHCGGCSGSWGAMSYYTAKKLLNIILSRCSRRGAGGWREGTKFKRAYCS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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