CCDS Report for Consensus CDS

PubMed

Entrez

Gene

BLAST

OMIM

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Genome Displays

	Ensembl
	NCBI
	UCSC
	VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS84619.1 (current version)

CCDS	Status	Species	Chrom.	Gene	CCDS Release	NCBI Annotation Release	Ensembl Annotation Release	Links
84619.1	Public	Mus musculus	3	Intu	23	108	98

Public since: CCDS release 21, NCBI annotation release 106, Ensembl annotation release 86

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 84619.1

Source	Nucleotide ID	Protein ID	Status in CCDS	Seq. Status
EBI	ENSMUST00000091186.6	ENSMUSP00000088725.3	Accepted	alive
NCBI	NM_175515.5	NP_780724.3	Updated	not alive
NCBI	NM_175515.6	NP_780724.3	Accepted	alive

RefSeq	Length	Related UniProtKB/SwissProt	Length	Identity	Gaps	Mismatches
NP_780724.3	942	Q059U7-1	942	100%	0	0

Chromosomal Locations for CCDS 84619.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)

Genome Browser links:

Chromosome	Start	Stop
3	40540864	40541009
3	40653706	40654253
3	40664260	40664345
3	40672571	40672774
3	40675226	40675344
3	40678883	40678972
3	40679532	40679609
3	40683357	40683546
3	40687776	40687829
3	40690696	40690758
3	40691715	40691936
3	40692499	40692969
3	40694161	40694258
3	40697484	40697673
3	40699639	40699796
3	40701202	40701313

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.

Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2829 nt):
ATGGCGGGCCTTGCGAGGGGAGACTCGCGTGGGCGCCCGCCCGAGCTCCCTGGAGACCTGTCCTCACAGG AAGAGGAAGAGGAGGAAGGCGACTCCGACGCCGGGGCCAGCAGCTTGGGCTCCTACTCCTCAGCCAGCAG TGACACTGATGTGGAGCCTGAGTGGCTGGACAGTGTGCAGAAGAACGGAGAACTGTTCTACCTGGAGCTG AGTGAGGACGAGGAGGAGAGCCTCCTTCCGGAGACCCAGACAGCGAACCACGTGAACCACGTGAGGTTCA GCGACAAGGAGGTCATCATCGAAGAGGACGATTCCAGAGAGAGGAAGAAGTCCGAGCCCAAGCTCAGGCG CTTCACCAAGATCTTGAAAAGCAAAAGCCTTTTACCCAGGCGTCACCACAAAAAGAGCAGCAGCAACAAT GGGCCCGTGTCCATTCTGAAACATCAGTCCTCCCAGAAGACGGGAGTCACCGTGCAGCAGCGGTACAAGG ATGTGACCGTCTACATCAACCCCAGAAAGCTGACGGCCATCAAGGCCAGGGAGCAGGTCAAACTCCTGGA AGTACTGGTGGGGATCATCCATCAGACCAAGAGGAGCTGGAAAAGGAGCGCGAAGCAGGCAGACGGAGAG AGGCTCGTGGTGCATGGCCTGTTGCCAGGAGGCTCGGCTATGAAGAGCGGTCAGGTCCTGGTTGGCGATG TCCTTGTTGCTGTGAATGATGTAGATGTGACTTCTGAAAACATAGAAAGAGTTCTGTCCTGCATCCCTGG GCCAATGCAGGTGAAGCTGACATTTGAAAACGCATATGCTGTGAAACGGGAAACAGCTCAACCCCAAAAG AAAAAGGCACAGTCGAGCACCCAAGATTTGGTGAAACTCCTCTGCGGGTCAGAGGCTGATGCTGTCCAGC ACAGTACCCTGAGCATCCCACACATCTCCATGTACCTCACACTGCAGCTCCAGTCAGAGGCAGCCAGGGA GGAGCAGGAAATTCTTTACCATTATCCAGTGTCTGAAGCATCTCAGAAACTCAAGAGCGTGAGGGGGATT TTTCTCACGCTCTGTGACATGCTGGAAAGCGTAACGGGGACACAAGTCACTAGCTCATCCCTCCATCTAA ATGGGAAACAAATTCATGTTGCTTACTTGAAAGAGTCTGACAAGTTGCTGTTAATTGGCCTGCCTGCTGA AGAAGTTCCTCTTCCTCAGTTAAGGAACATGATAGAAGATGTGGCCCAAACCCTAAAGTTCATGTATGGT TCTTTAGACAGCGCCTTCTGCCAGGTTGAGAACGCACCTCGTCTGGATCATTTCTTCAGTTTGTTCTTCG AACGAGCTCTTCGGCCCGGCAAGTTGCATCTCAGCGGCAGCCCCAGCGCCCAGCAGTATGCCGCAGCCAG TGCCGTGCTTTTGGACAATCTCCCGGGAGTCCGTTGGCTCGTGCTTCCACAGGAACTCAAGGTGGAACTG GACACAGCACTGAGTGACCTTGAGGCCGCTGACTTCGAAGAACTGTCTGAGGATTATTATGACATGAGAC GGCTGTATACAATTTTGGGTTCTTCTCTGTTTTACAAGGGTTACATGGTGTGCAGCCATCTGCCTAAGGA TGATGTTATTGAGATCGCTGCATACTGTCGCCAGCACTGCCTGCTGCCTTTAGCAGCAAAGCAAAGGATT GGCCAGCTGATAATATGGAGAGAGGTGTTCCCAAGACACCACCTCCAGCCCCCTTCAGACTCAGACCCCG AGGCCTTCCAGGAACCTGAAGGGAGATATTTCTTACTAGTTGTCGGATTGCGACATTATTTGTTGTGCGT GCTGTTAGAAGCTGGAGGCTGTGCATCTAAAGCTACTGGGAACCCTGGTCCCGATTGTATCTATGTAGAT CAGGTCAGAGCGACCCTTCATCAGCTGGAAGGAGTAGACTCCCGCATAGAGGAACAGCTAGCCACATCCC CGGGGCCCTGCTTGTCTTGTGCTGACTGGTTCCTTGCTGCTCCACGTGAAAAGGCAGATAGTTTGACTAC TTCACCTATCCTCAGTCGGCTGCAGGGGCCTTCCAAAACAGCAGCCTCTCCAACATGCAGGAGAACCTTT TTCAGTGACTATTCCTTCAAGGCACGGAAGCCCAGTCCCTCCAGGATCGGTGGAGGACGTGAACCCACTG AAGGGGAAGAAAGTGCTGGTCTGAGCCCACATGCTACCCCAGATGCAGTACGGAAGCAAAGAGAATCCGA AGGCTCGGACGACAATGTGGCCTTGCTTAAGCTTGCTAGAAAGAAGTCAACACTTCCAAATCCGTTTCAT TTGGGAACTTCGAAAAAAGAACTTTCAGAAAAAGAGTTGGAAGTCTATGACATAATGAAATTGACCTCCG GTCCTGAGAATACACTCTTCCACTATGTTGCCTTGGAAACAGTGCAAGGCATCTTCATCACCCCCACCCA TGAAGAGGTGGCTCAGCTAGGTGGTTCCGTTCACTCTCAACTGATAAAGAATTTCCATCAATGTTGTCTC TCTATCCGTGCATTTTTCCAGCAGACGCTGAAGGAAGAGAAAAAGAAAGCGCTAAGTGATGGAGAGCATT CGGAGCCTACAAATTCAGTGTCTTCTCTGAGCCCTGTGAAAGAACATGGTGTGCTGTTTGAATGCTCACC TGAAAACTGGACTGATCAGAAAAAGACTCCACCAGTCATGTCATACTGGGTAGTAGGGCGGCTCTTTCTT AACCCAAAACCTCAGGAACTATATGTCTGTTTTCACGACTCAGTCTCAGAAATTGCCATTGAAATGGCAT TTAAATTGTTCTTTGGGTTAACGTTGTAG
Translation (942 aa):
MAGLARGDSRGRPPELPGDLSSQEEEEEEGDSDAGASSLGSYSSASSDTDVEPEWLDSVQKNGELFYLEL SEDEEESLLPETQTANHVNHVRFSDKEVIIEEDDSRERKKSEPKLRRFTKILKSKSLLPRRHHKKSSSNN GPVSILKHQSSQKTGVTVQQRYKDVTVYINPRKLTAIKAREQVKLLEVLVGIIHQTKRSWKRSAKQADGE RLVVHGLLPGGSAMKSGQVLVGDVLVAVNDVDVTSENIERVLSCIPGPMQVKLTFENAYAVKRETAQPQK KKAQSSTQDLVKLLCGSEADAVQHSTLSIPHISMYLTLQLQSEAAREEQEILYHYPVSEASQKLKSVRGI FLTLCDMLESVTGTQVTSSSLHLNGKQIHVAYLKESDKLLLIGLPAEEVPLPQLRNMIEDVAQTLKFMYG SLDSAFCQVENAPRLDHFFSLFFERALRPGKLHLSGSPSAQQYAAASAVLLDNLPGVRWLVLPQELKVEL DTALSDLEAADFEELSEDYYDMRRLYTILGSSLFYKGYMVCSHLPKDDVIEIAAYCRQHCLLPLAAKQRI GQLIIWREVFPRHHLQPPSDSDPEAFQEPEGRYFLLVVGLRHYLLCVLLEAGGCASKATGNPGPDCIYVD QVRATLHQLEGVDSRIEEQLATSPGPCLSCADWFLAAPREKADSLTTSPILSRLQGPSKTAASPTCRRTF FSDYSFKARKPSPSRIGGGREPTEGEESAGLSPHATPDAVRKQRESEGSDDNVALLKLARKKSTLPNPFH LGTSKKELSEKELEVYDIMKLTSGPENTLFHYVALETVQGIFITPTHEEVAQLGGSVHSQLIKNFHQCCL SIRAFFQQTLKEEKKKALSDGEHSEPTNSVSSLSPVKEHGVLFECSPENWTDQKKTPPVMSYWVVGRLFL NPKPQELYVCFHDSVSEIAIEMAFKLFFGLTL

	Links Key
	Links to:	History report BLAST report Entrez Gene Nucleotide report Protein report
	Re-query CCDS DB by:	CCDS ID Gene ID Nucleotide ID Protein ID
	Genome Browser Links:	Ensembl Genome Browser NCBI Sequence Viewer UCSC Genome Browser VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH