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Report for CCDS84037.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
84037.1 Public Mus musculus 13 Ahrr 23 108 98 CCDS HistoryNCBI Gene:11624Re-query CCDS DB by CCDS ID:84037.1Re-query CCDS DB by GeneID:11624See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 21, NCBI annotation release 106, Ensembl annotation release 86

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 84037.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000109640.7 ENSMUSP00000105268.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000109640.7Link to Ensembl Protein Viewer:ENSMUSP00000105268.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000109640Re-query CCDS DB by Protein ID:ENSMUSP00000105268
Original member Current member NCBI NM_001317351.1 NP_001304280.1 Accepted alive Link to Nucleotide Sequence:NM_001317351.1Link to Protein Sequence:NP_001304280.1Re-query CCDS DB by Nucleotide ID:NM_001317351Re-query CCDS DB by Protein ID:NP_001304280Link to BLAST:NP_001304280.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001304280.1 573 Q3U1U7-2 573 99.8255% 0 1

Chromosomal Locations for CCDS 84037.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 74213657 74214665 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 74215372 74215510 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 74215743 74215804 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 74220541 74220737 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 74222901 74223034 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 74224765 74224894 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 74229888 74229938 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1722 nt):
ATGATCTTTTATGCATCGGCAACAATTGTGGACTATCTGGGCTTTCATCAGACAGATGTCATGCATCAAA
ACATTTATGACTACATCCATGTGGATGACCGGCAGGACTTCTGCAGACAGCTACACTGGGCCATGGACCC
TCCTCAGGTGGTGTTTGGGCAGTCCCCACATGCTGACACAGACAATACTGTCCTGGGGAAGCTGCTCAGG
GCCCAAGAAGGAGGCAAGGGCTTGCCCTCAGAGTACTCGGCCTTCTTGACACGCTGCTTCATTTGTCGTG
TTCGCTGCCTGCTGGACAGCACCTCTGGCTTTCTGACCATGCAGTTCCAAGGAAAACTAAAATTCCTGTT
TGGACAGAAGAAGAAGACACCATCAGGAACAGCCCTGCCTCCTCGACTCTCATTGTTCTGCATTGTGGCA
CCAGTCTTGCCTTCTGTAACTGAGATGAAAATGAAAAGCACATTCTTGAAGGCAAAGCACAGGGCAGACA
TTGTGGTTACGATGGACTCAAGGGCAAAAGCTGTTACAAGTCTATGTGAATCAGAATTGCATCCCAAACT
CAATTACTTAGCAGGAAAGAGCAATGGAGAAAATGGCATTTCACTGTTCAGGGGACAAACAGATAGGAGC
CACTGGGCCCGGGCTCTAGCCAGATCTTCATGTCTGTGCCTCAGGGGTGGTCCTGACCTGCTGGACCCCA
AGGGGACTTCAGGGGACAGAGAAGAGGAGGACCAGAAGCACATACTAAGGAGATCCCCTGGTGCCTGGGG
GCAGAGGGAGATGCACAAGTACAGTTATGGTTTGGAGACACCAGTACACTTGAGGCACCTGAACTGGAGC
ACAGAACAGCGAAGTCAGGAGAGCACTACCAAGCTGACTCGGCAGCCCAGTAAGAATGAGCCATCCACGT
GTCTGGTGCCCCATGGTTCCTGTGTGCCCTACCCTGGAAGCCAGGGCATGCTTAGTGCCAGCAACATGGC
TTCTTTTAGAGATTCACTAGACCATCCCACTGGTGCCTACTGCAGTCAGATGAACAGACCCTTGTCGGAT
ATCCACCAGGGCCAGGTGGATCCTTCCACCTGCCATATCTCCCAGGGCAGTCTGGGATCTAGGATCCCTC
TGACTGGAATGCAGCGCTTCACAGCTCGGGGATTTTCTACAGAGGATGCAAAATTACCCAGCCTGCCAGT
GACCATAGGCACTCCATGCAACCCAGTATTGTCACTGGATGTGCCAATCAAGATGGAGAATGAATCTGGG
TCCCAGGATATAGTTGAAGCTAGCACAACTAGCTGTTTGTGGCTGGGAACCAGCGACATGGCCAGAGGAC
ATCTGGTTGGTTTCCCTGCCAGGATGCACCTGAAAACAGAGCCCGACTATAGGCAGCAGGCCTGTACCCC
ACACCTTGGTCATGGTATGCTGGGAACTAATCCCTACAGCAGAGATACTGTTGGATCCTGTAGGGAGCAT
GCTCCTCTTTACTCTGCACATTGCACCTGCCTGGATCCAGAGCCTCCTCATCACTTCTTCATGTGTAGCC
ACAGTGAGAGCCAGCACCCCTCATTGGACCAAGACTGCAGAGCTCCTATTGTTAAGCGTGAGCCTCTGGA
CTCACCATCATGGGCTGCTCCTGGTCAGGTGACTGTGCCCAGGATGTTCCCTAAGAGTGCCTCTAAAACT
GTGATCCCATCCAAAGGCTCTGATGGAATTTTCCTACCCTAG

Translation (573 aa):
MIFYASATIVDYLGFHQTDVMHQNIYDYIHVDDRQDFCRQLHWAMDPPQVVFGQSPHADTDNTVLGKLLR
AQEGGKGLPSEYSAFLTRCFICRVRCLLDSTSGFLTMQFQGKLKFLFGQKKKTPSGTALPPRLSLFCIVA
PVLPSVTEMKMKSTFLKAKHRADIVVTMDSRAKAVTSLCESELHPKLNYLAGKSNGENGISLFRGQTDRS
HWARALARSSCLCLRGGPDLLDPKGTSGDREEEDQKHILRRSPGAWGQREMHKYSYGLETPVHLRHLNWS
TEQRSQESTTKLTRQPSKNEPSTCLVPHGSCVPYPGSQGMLSASNMASFRDSLDHPTGAYCSQMNRPLSD
IHQGQVDPSTCHISQGSLGSRIPLTGMQRFTARGFSTEDAKLPSLPVTIGTPCNPVLSLDVPIKMENESG
SQDIVEASTTSCLWLGTSDMARGHLVGFPARMHLKTEPDYRQQACTPHLGHGMLGTNPYSRDTVGSCREH
APLYSAHCTCLDPEPPHHFFMCSHSESQHPSLDQDCRAPIVKREPLDSPSWAAPGQVTVPRMFPKSASKT
VIPSKGSDGIFLP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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