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Report for CCDS83823.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
83823.1 Public Mus musculus 11 Gsg1l2 23 108 98 CCDS HistoryNCBI Gene:544792Re-query CCDS DB by CCDS ID:83823.1Re-query CCDS DB by GeneID:544792See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 21, NCBI annotation release 106, Ensembl annotation release 86

Review status: Reviewed (by RefSeq and Havana)


Attributes
Inferred exon combination

Sequence IDs included in CCDS 83823.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000181566.1 ENSMUSP00000137895.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000181566.1Link to Ensembl Protein Viewer:ENSMUSP00000137895.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000181566Re-query CCDS DB by Protein ID:ENSMUSP00000137895
Original member Current member NCBI NM_001347057.1 NP_001333986.1 Accepted alive Link to Nucleotide Sequence:NM_001347057.1Link to Protein Sequence:NP_001333986.1Re-query CCDS DB by Nucleotide ID:NM_001347057Re-query CCDS DB by Protein ID:NP_001333986Link to BLAST:NP_001333986.1

Chromosomal Locations for CCDS 83823.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 67774608 67774917 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 67782506 67782553 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 67785170 67785322 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 67786418 67786529 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 67789364 67789613 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (873 nt):
ATGGACAGGGCGAGGTGGCAGCGGATGCTGACCCTCCTCCCCATCTGCCTGGCCCTTGCCTTCTCCCTCA
CAGCCATGGGCAGCAGCCACTGGTGCGAGGGGATCCGACGAATGACAAAACCTCTATGCCAGGATCTCCT
CGGGGGCTTGAACTGCATTCACTTCAGCCGGTCCAGCAGCAGCACGGGCAGTAAGCACGATGACAGCCAG
GCTGTCCAGTACATCTGGGAGACAGGGGACGACAAGTTTATCCAACGCAGGTTCCATGCGGGGCTTTGGC
AGTCCTGTGAGGAAAGCCTCAACAGCACAGGTGAGCGGTGCAGGTGCTTCCTGGGGATAGTACCCGCCGA
GGGACAAGGAGTTTTATGGCTCTCCATTGGGGCTGAAGTCTTGGATATCTTCCTGATACTGACAGGTGTC
ATCCTCCTGGGCTTCAGCATGAGTTGTTACAGTTCCGGATGCAGCTGGCTCAACGTGGACGCCTCAGTGG
CTATCCTCATGGTGCTTGCAGGACTCCTGGGCATGGTGGCTCACATGATGTACACAACTAGTTTTCAAAT
CACCGTGAACCTAGGACCAGAAGATTGGCGGCCTCAGACATGGGACTATGGCTGGTCCTATTGTCTTGCC
TGGGGATCTTTTGCTCTCTGTATGGCTGTTTCAGTGGCGACCATGAGCAGATACACCACAGCCCAAGCAG
AGGTGCCAAGGGCACAGAAAGGTGGTCCATACCCTCAGCACAACACCCCACAGCCTGGACCTTCACGGAA
GGTTTGGCAAACAGGAGCGACTCCCCATCCTGTGGGACACATCTTCACGAATGTTCCTGGGCACCCGCCC
CCAGGTACAGGAGGCAAAGTGTCCATGTGCTAG

Translation (290 aa):
MDRARWQRMLTLLPICLALAFSLTAMGSSHWCEGIRRMTKPLCQDLLGGLNCIHFSRSSSSTGSKHDDSQ
AVQYIWETGDDKFIQRRFHAGLWQSCEESLNSTGERCRCFLGIVPAEGQGVLWLSIGAEVLDIFLILTGV
ILLGFSMSCYSSGCSWLNVDASVAILMVLAGLLGMVAHMMYTTSFQITVNLGPEDWRPQTWDYGWSYCLA
WGSFALCMAVSVATMSRYTTAQAEVPRAQKGGPYPQHNTPQPGPSRKVWQTGATPHPVGHIFTNVPGHPP
PGTGGKVSMC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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