NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS83658.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
83658.1 Public Mus musculus 1 Bpnt1 23 108 98 CCDS HistoryNCBI Gene:23827Re-query CCDS DB by CCDS ID:83658.1Re-query CCDS DB by GeneID:23827See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 21, NCBI annotation release 106, Ensembl annotation release 86

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 83658.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000110965.1 ENSMUSP00000106590.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000110965.1Link to Ensembl Protein Viewer:ENSMUSP00000106590.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000110965Re-query CCDS DB by Protein ID:ENSMUSP00000106590
Original member Current member NCBI NM_001347212.1 NP_001334141.1 Accepted alive Link to Nucleotide Sequence:NM_001347212.1Link to Protein Sequence:NP_001334141.1Re-query CCDS DB by Nucleotide ID:NM_001347212Re-query CCDS DB by Protein ID:NP_001334141Link to BLAST:NP_001334141.1

Chromosomal Locations for CCDS 83658.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 185341268 185341327 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 185345315 185345422 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 185346675 185346723 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 185348744 185348835 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 185352182 185352379 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 185353957 185354062 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 185356478 185356626 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (762 nt):
ATGAGCATATGCTCTTCCCTGGCCCGGAAGTTCCCGAAGCTGACCATCATAGGGGAAGAGGACCTGCCTC
CTGGGGAAGTGGATCAAGAGCTGATTGAAGACGGGCAGTGGGAGGAGATCCTGAAGCAGCCGTGCCCCTC
GCAGTACAGTGCTATCAAGGAGGAAGACCTTGTGGTTTGGGTTGACCCCTTAGATGGCACCAAGGAGTAC
ACTGAAGGTCTTCTTGACAATGTAACAGTTCTCATTGGGATTGCTTATGAAGGAAAGGCCATCGCAGGCA
TCATCAACCAGCCGTATTACAACTACCAGGCAGGACCCGACGCGGCGCTGGGCAGGACCATCTGGGGAGT
TCTGGGTTTGGGTGCTTTTGGGTTTCAGCTGAAGGAAGCCCCTGCCGGGAAGCACATTATCACAACCACC
AGATCCCATAGCAACCAGCTGGTCACAGACTGCATTTCCGCCATGAACCCCGACACCGTGCTGCGAGTGG
GAGGAGCAGGAAACAAGATTATCCAGCTGATCGAAGGCAAAGCTTCTGCTTATGTGTTTGCAAGTCCTGG
GTGTAAGAAGTGGGACACTTGTGCCCCGGAAGTTATCTTGCATGCTGTGGGAGGGAAGTTGACAGACATC
CATGGGAATGCCCTGCAGTACAACAAGGAGGTGAAACATATGAACTCTGCCGGTGTCCTGGCTGCACTGA
GGAACTACGAGTACTATGCAAGCCATGTTCCAGAGTCGGTCAAAAATGCGCTCATTCCATGA

Translation (253 aa):
MSICSSLARKFPKLTIIGEEDLPPGEVDQELIEDGQWEEILKQPCPSQYSAIKEEDLVVWVDPLDGTKEY
TEGLLDNVTVLIGIAYEGKAIAGIINQPYYNYQAGPDAALGRTIWGVLGLGAFGFQLKEAPAGKHIITTT
RSHSNQLVTDCISAMNPDTVLRVGGAGNKIIQLIEGKASAYVFASPGCKKWDTCAPEVILHAVGGKLTDI
HGNALQYNKEVKHMNSAGVLAALRNYEYYASHVPESVKNALIP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH