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Report for CCDS83297.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
83297.1 Public Homo sapiens 8 UBXN2B 24 110 108 CCDS HistoryNCBI Gene:137886Re-query CCDS DB by CCDS ID:83297.1Re-query CCDS DB by GeneID:137886See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 20, NCBI annotation release 108, Ensembl annotation release 85

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 83297.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000523409.5 ENSP00000428314.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000523409.5Link to Ensembl Protein Viewer:ENSP00000428314.1Re-query CCDS DB by Nucleotide ID:ENST00000523409Re-query CCDS DB by Protein ID:ENSP00000428314
Original member Current member NCBI NM_001330535.2 NP_001317464.1 Accepted alive Link to Nucleotide Sequence:NM_001330535.2Link to Protein Sequence:NP_001317464.1Re-query CCDS DB by Nucleotide ID:NM_001330535Re-query CCDS DB by Protein ID:NP_001317464Link to BLAST:NP_001317464.1

Chromosomal Locations for CCDS 83297.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 8 (NC_000008.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 58411386 58411469 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 58416850 58416953 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 58430519 58430669 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 58433160 58433243 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 58434395 58434504 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 58434858 58434915 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (591 nt):
ATGGCGGAGGGCGGAGGCCCTGAGCCCGGCGAGCAGGAGAGGAGGTCTTCCGGGCCGCGGCCTCCGAGCG
CGCGGGATTTGCAGTTGGCCTTGGCAGAATTGTATGAAGATGAAGTGAAGTGCAAATCTTCCAAGTCTAA
TAGACCTAAAGCCACAGTCTTCAAGAGCCCACGGACACCACCTCAACGGTTTTACTCAAGTGAACATGAA
TACAGTGGATTAAATATAGTTCGACCTTCAACTGGGAAAATTGTGAATGAACTTTTCAAAGAGGCAAGGG
AACATGGGGCTGTCCCTCTGAATGAAGCCACAAGAGCTTCAGGTGATGATAAATCTAAGTCATTTACAGG
TGGAGGATACAGATTGGGTAGTTCTTTTTGTAAGCGGTCTGAATATATCTATGGAGAAAATCAGCTGCAA
GATGTTCAGATTTTGCTTAAACTGTGGAGCAATGGTTTCAGTTTAGATGATGGAGAATTGAGACCTTACA
ATGAACCAACAAATGCTCAATTTCTGGAGTCTGTTAAGAGAGGGGTGACTCTCATTGCATGTATGCCTGA
AATTCAGCAACTTATGTTAGAAATCTTTTAA

Translation (196 aa):
MAEGGGPEPGEQERRSSGPRPPSARDLQLALAELYEDEVKCKSSKSNRPKATVFKSPRTPPQRFYSSEHE
YSGLNIVRPSTGKIVNELFKEAREHGAVPLNEATRASGDDKSKSFTGGGYRLGSSFCKRSEYIYGENQLQ
DVQILLKLWSNGFSLDDGELRPYNEPTNAQFLESVKRGVTLIACMPEIQQLMLEIF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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