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Report for CCDS82596.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
82596.1 Public Homo sapiens 20 HSPA12B 24 110 108 CCDS HistoryNCBI Gene:116835Re-query CCDS DB by CCDS ID:82596.1Re-query CCDS DB by GeneID:116835See the combined annotation on chromosome 20 in Sequence Viewer

Public since: CCDS release 20, NCBI annotation release 108, Ensembl annotation release 85

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 82596.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000399701.1 ENSP00000382608.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000399701.1Link to Ensembl Protein Viewer:ENSP00000382608.1Re-query CCDS DB by Nucleotide ID:ENST00000399701Re-query CCDS DB by Protein ID:ENSP00000382608
Original member Current member NCBI NM_001318322.2 NP_001305251.1 Accepted alive Link to Nucleotide Sequence:NM_001318322.2Link to Protein Sequence:NP_001305251.1Re-query CCDS DB by Nucleotide ID:NM_001318322Re-query CCDS DB by Protein ID:NP_001305251Link to BLAST:NP_001305251.1

Chromosomal Locations for CCDS 82596.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 20 (NC_000020.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20See the combined annotation on chromosome 20 in Sequence Viewer

Chromosome Start Stop Links
20 3742401 3742408 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 3744902 3745088 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 3745493 3745597 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 3745915 3746031 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 3748217 3748391 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 3749232 3749318 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 3749750 3749854 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 3749969 3750227 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 3750804 3750907 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 3751511 3752166 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1803 nt):
ATGATGAGGAAATGGGAGGGCGGAGACCCGGGCGTGGCCCACCAGAAGACCCCGACCTGCCTGCTGCTGA
CTCCGGAGGGCGCCTTCCACAGCTTTGGCTACACCGCCCGCGATTACTACCATGACCTGGACCCCGAAGA
GGCGCGGGACTGGCTCTACTTCGAGAAGTTCAAGATGAAGATCCACAGCGCCACGGATCTCACCTTGAAG
ACCCAGCTAGAGGCAGTAAATGGAAAGACGATGCCCGCCCTGGAGGTGTTCGCCCATGCCCTGCGCTTCT
TCAGGGAGCACGCCCTTCAGGAGCTGAGGGAGCAGAGCCCATCGCTGCCAGAGAAGGACACTGTGCGCTG
GGTGTTGACGGTGCCTGCCATCTGGAAACAGCCAGCCAAGCAGTTCATGCGGGAGGCTGCCTACCTGGCT
GGACTAGTGTCCCGAGAGAATGCAGAGCAGCTACTCATCGCCCTGGAGCCCGAGGCCGCCTCGGTATACT
GCCGCAAGCTGCGCCTGCACCAGCTCCTGGACCTGAGTGGCCGGGCCCCAGGTGGTGGGCGCCTGGGTGA
GCGCCGCTCCATCGACTCCAGCTTCCGTCAGGCTCGGGAGCAGCTGCGAAGGTCCCGCCACAGCCGCACG
TTCCTGGTGGAGTCAGGCGTAGGAGAGCTGTGGGCAGAGATGCAAGCAGGAGACCGCTACGTGGTGGCCG
ACTGCGGCGGAGGCACCGTGGACCTGACGGTGCACCAGCTGGAGCAGCCCCATGGCACCCTCAAGGAGCT
CTACAAGGCATCTGGGGGCCCTTATGGCGCGGTGGGCGTGGACCTGGCCTTCGAGCAGCTGCTGTGCCGC
ATCTTCGGCGAGGACTTCATCGCCACCTTCAAAAGGCAACGGCCGGCAGCCTGGGTAGATCTGACCATCG
CCTTCGAGGCTCGCAAGCGCACTGCTGGCCCACACCGTGCAGGGGCGCTCAACATCTCGCTGCCCTTCTC
CTTCATTGACTTCTACCGCAAGCAGCGGGGCCACAACGTGGAGACCGCTCTGCGCAGGAGCAGCGTGAAC
TTCGTGAAGTGGTCCTCACAGGGGATGCTCCGAATGTCTTGTGAAGCCATGAACGAGCTCTTTCAGCCCA
CCGTCAGCGGGATCATCCAGCACATAGAGGCCCTGCTGGCACGGCCGGAGGTGCAGGGTGTGAAGCTGCT
GTTCCTAGTGGGCGGCTTCGCCGAGTCAGCGGTGCTGCAGCACGCGGTGCAGGCGGCGCTGGGCGCCCGC
GGTCTGCGTGTCGTGGTCCCGCACGACGTGGGCCTCACCATCCTCAAAGGCGCGGTGCTGTTCGGCCAGG
CGCCGGGCGTGGTGCGGGTCCGCCGCTCGCCGCTCACCTATGGCGTGGGCGTGCTCAACCGCTTTGTGCC
TGGGCGCCACCCGCCCGAAAAGCTGCTGGTTCGCGACGGCCGCCGCTGGTGCACCGACGTCTTCGAGCGC
TTCGTGGCCGCCGAGCAGTCGGTGGCCCTGGGCGAGGAGGTGCGGCGCAGCTACTGCCCGGCGCGTCCCG
GCCAGCGGCGCGTACTCATCAACCTGTACTGCTGCGCGGCAGAGGATGCGCGCTTCATCACCGACCCCGG
CGTGCGCAAATGCGGCGCGCTCAGCCTCGAGCTTGAGCCCGCCGACTGCGGCCAGGACACCGCCGGCGCG
CCTCCCGGCCGCCGCGAGATCCGCGCCGCCATGCAGTTTGGCGACACCGAAATTAAGGTCACCGCCGTCG
ACGTCAGCACCAATCGCTCCGTGCGCGCGTCCATCGACTTTCTTTCCAACTGA

Translation (600 aa):
MMRKWEGGDPGVAHQKTPTCLLLTPEGAFHSFGYTARDYYHDLDPEEARDWLYFEKFKMKIHSATDLTLK
TQLEAVNGKTMPALEVFAHALRFFREHALQELREQSPSLPEKDTVRWVLTVPAIWKQPAKQFMREAAYLA
GLVSRENAEQLLIALEPEAASVYCRKLRLHQLLDLSGRAPGGGRLGERRSIDSSFRQAREQLRRSRHSRT
FLVESGVGELWAEMQAGDRYVVADCGGGTVDLTVHQLEQPHGTLKELYKASGGPYGAVGVDLAFEQLLCR
IFGEDFIATFKRQRPAAWVDLTIAFEARKRTAGPHRAGALNISLPFSFIDFYRKQRGHNVETALRRSSVN
FVKWSSQGMLRMSCEAMNELFQPTVSGIIQHIEALLARPEVQGVKLLFLVGGFAESAVLQHAVQAALGAR
GLRVVVPHDVGLTILKGAVLFGQAPGVVRVRRSPLTYGVGVLNRFVPGRHPPEKLLVRDGRRWCTDVFER
FVAAEQSVALGEEVRRSYCPARPGQRRVLINLYCCAAEDARFITDPGVRKCGALSLELEPADCGQDTAGA
PPGRREIRAAMQFGDTEIKVTAVDVSTNRSVRASIDFLSN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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