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Report for CCDS82164.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
82164.1 Public Homo sapiens 17 HLF 24 110 108 CCDS HistoryNCBI Gene:3131Re-query CCDS DB by CCDS ID:82164.1Re-query CCDS DB by GeneID:3131See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 20, NCBI annotation release 108, Ensembl annotation release 85

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 82164.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000430986.6 ENSP00000402496.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000430986.6Link to Ensembl Protein Viewer:ENSP00000402496.2Re-query CCDS DB by Nucleotide ID:ENST00000430986Re-query CCDS DB by Protein ID:ENSP00000402496
Original member Current member EBI ENST00000573945.5 ENSP00000460296.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000573945.5Link to Ensembl Protein Viewer:ENSP00000460296.1Re-query CCDS DB by Nucleotide ID:ENST00000573945Re-query CCDS DB by Protein ID:ENSP00000460296
Original member Current member EBI ENST00000575345.5 ENSP00000460572.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000575345.5Link to Ensembl Protein Viewer:ENSP00000460572.1Re-query CCDS DB by Nucleotide ID:ENST00000575345Re-query CCDS DB by Protein ID:ENSP00000460572
Original member Current member NCBI NM_001330375.2 NP_001317304.1 Accepted alive Link to Nucleotide Sequence:NM_001330375.2Link to Protein Sequence:NP_001317304.1Re-query CCDS DB by Nucleotide ID:NM_001330375Re-query CCDS DB by Protein ID:NP_001317304Link to BLAST:NP_001317304.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001317304.1 210 Q16534-2 210 100% 0 0

Chromosomal Locations for CCDS 82164.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 55267891 55268086 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 55315227 55315447 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 55320664 55320879 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (633 nt):
ATGGACCTGGAGGAGTTTTTGTCAGAAAATGGCATTCCCCCCAGCCCATCTCAGCATGACCACAGCCCTC
ACCCTCCTGGGCTGCAGCCAGCTTCCTCGGCTGCCCCCTCGGTCATGGACCTCAGCAGCCGGGCCTCTGC
ACCCCTTCACCCTGGCATCCCATCTCCGAACTGTATGCAGAGCCCCATCAGACCAGGTCAGCTGTTGCCA
GCAAACCGCAATACACCAAGTCCCATTGATCCTGACACCATCCAGGTCCCAGTGGGTTATGAGCCAGACC
CAGCAGATCTTGCCCTTTCCAGCATCCCTGGCCAGGAAATGTTTGACCCTCGCAAACGCAAGTTCTCTGA
GGAAGAACTGAAGCCACAGCCCATGATCAAGAAAGCTCGCAAAGTCTTCATCCCTGATGACCTGAAGGAT
GACAAGTACTGGGCAAGGCGCAGAAAGAACAACATGGCAGCCAAGCGCTCCCGCGACGCCCGGAGGCTGA
AAGAGAACCAGATCGCCATCCGGGCCTCGTTCCTGGAGAAGGAGAACTCGGCCCTCCGCCAGGAGGTGGC
TGACTTGAGGAAGGAGCTGGGCAAATGCAAGAACATACTTGCCAAGTATGAGGCCAGGCACGGGCCCCTG
TAG

Translation (210 aa):
MDLEEFLSENGIPPSPSQHDHSPHPPGLQPASSAAPSVMDLSSRASAPLHPGIPSPNCMQSPIRPGQLLP
ANRNTPSPIDPDTIQVPVGYEPDPADLALSSIPGQEMFDPRKRKFSEEELKPQPMIKKARKVFIPDDLKD
DKYWARRRKNNMAAKRSRDARRLKENQIAIRASFLEKENSALRQEVADLRKELGKCKNILAKYEARHGPL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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