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Report for CCDS81302.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
81302.1 Public Homo sapiens 1 TRIT1 24 110 108 CCDS HistoryNCBI Gene:54802Re-query CCDS DB by CCDS ID:81302.1Re-query CCDS DB by GeneID:54802See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 20, NCBI annotation release 108, Ensembl annotation release 85

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 81302.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000441669.6 ENSP00000388333.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000441669.6Link to Ensembl Protein Viewer:ENSP00000388333.2Re-query CCDS DB by Nucleotide ID:ENST00000441669Re-query CCDS DB by Protein ID:ENSP00000388333
Original member Current member NCBI NM_001312692.1 NP_001299621.1 Accepted alive Link to Nucleotide Sequence:NM_001312692.1Link to Protein Sequence:NP_001299621.1Re-query CCDS DB by Nucleotide ID:NM_001312692Re-query CCDS DB by Protein ID:NP_001299621Link to BLAST:NP_001299621.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001299621.1 385 Q9H3H1-5 385 100% 0 0

Chromosomal Locations for CCDS 81302.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 39841744 39841913 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 39844101 39844218 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 39844531 39844640 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 39847220 39847297 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 39847548 39847660 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 39847986 39848091 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 39850119 39850261 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 39852731 39852876 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 39883318 39883491 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1158 nt):
ATGGCGTCCGTGGCGGCTGCACGAGCAGTTCCCGTGGGCAGTGGGCTCAGGGGCCTGCAACGGACCCTAC
CTCTTGTAGTGATTCTCGGGGCCACGGGCACCGGCAAATCCACGCTGGCGTTGCAGCTAGGCCAGCGGCT
CGGCGGTGAGATCGTCAGCGCTGACTCCATGCAGCCCCAGGAGATGGGCACTGAGAAAGTGATTGACCGA
AAAGTGGAGCTTGAAAAGGAGGATGGTCTTGTACTTCACAAACGCCTAAGCCAGGTGGACCCAGAAATGG
CTGCCAAGCTGCATCCACATGACAAACGCAAAGTGGCCAGGAGCTTGCAAGTTTTTGAAGAAACAGGAAT
CTCTCATAGTGAATTTCTCCATCGTCAACATACGGAAGAAGGTGGTGGTCCCCTTGGAGGTCCTCTGAAG
TTCTCTAACCCTTGCATCCTTTGGCTTCATGCTGACCAGGCAGATGAGCGCTTGGATAAGAGGGTGGATG
ACATGCTTGCTGCTGGGCTCTTGGAGGAACTAAGAGATTTTCACAGACGCTATAATCAGAAGAATGTTTC
GGAAAATAGCCAGGACTATCAACATGGTATCTTCCAATCAATTGGCTTCAAGGAATTTCACGAGTACCTG
ATCACTGAGGGAAAATGCACACTGGAGACTAGTAACCAGCTTCTAAAGAAAGGTATTGAGGCTCTGAAAC
AAGTAACTAAGAGATATGCCCGGAAACAAAACCGATGGGTTAAAAACCGTTTTTTGAGCAGACCTGGTCC
CATTGTCCCCCCTGTCTATGGCTTAGAGGTATCTGATGTCTCGAAGTGGGAAGAGTCTGTTCTTGAACCT
GCTCTTGAAATCGTGCAAAGTTTCATCCAGGGCCACAAGCCTACAGCCACTCCAATAAAGATGCCATACA
ATGAAGCTGAGAACAAGAGAAGTTATCACCTGTGTGACCTCTGTGATCGAATCATCATTGGGGATCGCGA
ATGGGCAGCGCACATAAAATCCAAATCCCACTTGAACCAACTGAAGAAAAGAAGAAGATTGGACTCAGAT
GCTGTCAACACCATAGAAAGTCAGAGTGTTTCCCCAGACCATAACAAAGAACCTAAAGAGAAGGGATCCC
CAGGGCAGAATGATCAAGAGCTGAAATGCAGCGTTTAA

Translation (385 aa):
MASVAAARAVPVGSGLRGLQRTLPLVVILGATGTGKSTLALQLGQRLGGEIVSADSMQPQEMGTEKVIDR
KVELEKEDGLVLHKRLSQVDPEMAAKLHPHDKRKVARSLQVFEETGISHSEFLHRQHTEEGGGPLGGPLK
FSNPCILWLHADQADERLDKRVDDMLAAGLLEELRDFHRRYNQKNVSENSQDYQHGIFQSIGFKEFHEYL
ITEGKCTLETSNQLLKKGIEALKQVTKRYARKQNRWVKNRFLSRPGPIVPPVYGLEVSDVSKWEESVLEP
ALEIVQSFIQGHKPTATPIKMPYNEAENKRSYHLCDLCDRIIIGDREWAAHIKSKSHLNQLKKRRRLDSD
AVNTIESQSVSPDHNKEPKEKGSPGQNDQELKCSV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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