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Report for CCDS81082.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
81082.1 Public Mus musculus 9 Map4 23 108 98 CCDS HistoryNCBI Gene:17758Re-query CCDS DB by CCDS ID:81082.1Re-query CCDS DB by GeneID:17758See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 81082.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000164930.7 ENSMUSP00000131285.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000164930.7Link to Ensembl Protein Viewer:ENSMUSP00000131285.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000164930Re-query CCDS DB by Protein ID:ENSMUSP00000131285
Original member NCBI NM_001311163.1 NP_001298092.1 Updated not alive Link to Nucleotide Sequence:NM_001311163.1Link to Protein Sequence:NP_001298092.1Re-query CCDS DB by Nucleotide ID:NM_001311163Re-query CCDS DB by Protein ID:NP_001298092
Current member NCBI NM_001311163.2 NP_001298092.1 Accepted alive Link to Nucleotide Sequence:NM_001311163.2Link to Protein Sequence:NP_001298092.1Re-query CCDS DB by Nucleotide ID:NM_001311163Re-query CCDS DB by Protein ID:NP_001298092Link to BLAST:NP_001298092.1

Chromosomal Locations for CCDS 81082.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 110052070 110053522 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 110063017 110063123 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 110064228 110064449 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 110067485 110067668 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 110068524 110068583 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 110068693 110068985 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 110072613 110072705 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 110078003 110078084 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 110079781 110079893 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 110081421 110081610 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 110081841 110081845 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2802 nt):
ATGTCGCTTCCAGAGAAGCAGCCAGCCGCGCTCACTGCTGCTCTCGCTGCCGAGGACGAGCAGCTCTCTA
AAGGCAACCCTCCAGAGTGCGGGATGGACTCCCGGAAAGAAATCGGTCAGGATGGATTTGAATGGCAGAG
GACAGAGGGTAAACTGAATGAAATCGGGCTGAATGTCAGCATGGATGGACAGCTGAAAGACAGGCTTGTG
AAGAATTCCAGCTTCCTGGAACAGAATAAGCTCGGCTTTTTTGAGGGGAAGCTAGACAAAGAACTTAGCA
TCGAAAAGCCTAACAAGGCGTATCAAGAAACCTCCGGTCACCTTGAGAGCGGGTATGTGATTTCAGGAAC
CTGCCAGCCCTCGGAGGGGAACTTAGTTCACCAGAAGGCAGCAGAGTTCCACCCGGGACTCACCGAGGGG
AAAGACAAAGCAGCTACAGTTCAGGGGAAGGTGGCTGGGAAGAGTGGACTAGAGATCAAGAGCCAGCCAG
ATCTAAATTTTCCCGGGGCTGCTGACACTCTCACTCAACATGGTGAGGAACAAGAAACCAGTGCTTGGAA
CGCCAACTTTTACTCAGTAACTCAGAGCCCTCAGGCTGCAACTCCAGGAAAAGAGAAGAATGGCCTCGTC
TCCAGCTGCTCTGTGACTGGGGTGATGAGTGATAACTCTGGGCAGCTTAATAATAAGTCCCCATTACTGG
TGGCTATCACCCACCCAGACCCAACTAGTGAGCATTTGCCCACCACTAGTCCACCAATCACTATGGTGGA
ATTCACTCAGGAAAATTTGAATGCAGGCCAGGATAAAGAGTTGGAGAAATTAAGGTCTTCTGAGGAGGGG
CCTATGCTTGACCAAGTACCCCAGCAGAAAAAGGCAATCCGAAGAGCCCTGTCTGAGTGTTACCATCTCT
CAGTGCCCCCAGCTGTGAATCTTGTCGATAAGTACCCTGAGCTGCCTGCCCGAGAGGAGCTTCCTTCTGA
CCTGCTGCCTCCCACCAGTAGCCCAATGCCAAGCCCTATGCCCAGGAAGCTGGGGGTGCCTGCCATGAGG
CGCTCCATGACTGTGGCTGAGGACCAGTCAGCTAGCTGCAGATTGAGTGCTGGGGAACTGGCCAGCCTGT
CTGCTTCTCAGGTACCAACTGCTTTAACCTTCGAGGAACCAGTGGCCAAGGAGAGAGAAGAACAGATCCA
CTTCAGCAATGATAGCAACAGCTCTGGGAAGAAGGAACTGGGCATCGCTGGGCTGTATCTCCACAGTAAG
CTGGAACAGATTCCCGAAGGAAGCCACAAGGGAAAGGGGCAGGAAAATACTGGTGAGACAAGAGTTGATT
CATGTCCCTTCATCTGCCTGGGAGGCGAGAAACAGCTGATGGCACTGGCAGGGAAGAAAGAAATTGAGGT
CACTGCAACCCAGAGCATTCCATCATTGCTGTTGGAAGAGACCCCACGTGATGGAGTATCCCGGCAAGAA
GAAGCAAAGGCTGCTGTAGGTGTGACTGGAAATGACATCACTACCCCGCCAAACAAGGAGCCACCACCAA
GCCCAGAAAAGAAAGCAAAGCCTTTGGCCACCACTCAACCTGCAAAGACTTCAACATCGAAAGCCAAAAC
ACAGCCCACTTCTCTCCCTAAGCAACCAGCTCCCACCACCTCTGGTGGGTTGAATAAAAAACCCATGAGC
CTCGCCTCAGGCTCAGTGCCAGCTGCCCCACACAAACGCCCTGCTGCTGCCACTGCTACTGCCAGGCCTT
CCACCCTACCTGCCAGAGACGTGAAGCCAAAGCCAATTACAGAAGCTAAGGTTGCCGAAAAGCGGACCTC
TCCATCCAAGCCTTCATCTGCCCCAGCCCTCAAACCTGGACCTAAAACCACCCCAACCGTTTCAAAAGCC
ACATCTCCCTCAACTCTTGTTTCCACTGGACCAAGTAGTAGAAGTCCAGCTACAACTCTGCCTAAGAGGC
CAACCAGCATCAAGACTGAGGGGAAACCTGCTGATGTCAAAAGGATGACTGCTAAGTCTGCCTCAGCTGA
CTTGAGTCGCTCAAAGACCACCTCTGCCAGTTCTGTGAAGAGAAACACCACTCCCACTGGGGCAGCACCC
CCAGCAGGGATGACTTCCACTCGAGTCAAGCCCATGTCTGCACCTAGCCGCTCTTCTGGGGCTCTTTCTG
TGGACAAGAAGCCCACTTCCACTAAGCCTAGCTCCTCTGCTCCCAGGGTGAGCCGCCTGGCCACAACTGT
TTCTGCCCCTGACCTGAAGAGTGTTCGCTCCAAGGTCGGCTCTACAGAAAACATCAAACACCAGCCTGGA
GGAGGCCGGGTCCAGATAGTATCCAAAAAAGTGAGCTACAGCCATATTCAATCCAAGTGTGGTTCCAAGG
ACAATATTAAGCATGTCCCTGGAGGTGGCAATGTTCAGATTCAGAACAAGAAAGTGGACATATCCAAGGT
CTCCTCCAAGTGTGGGTCCAAAGCTAATATCAAGCACAAGCCTGGTGGAGGAGATGTCAAGATTGAAAGT
CAGAAGTTGAACTTCAAGGAGAAGGCCCAAGCCAAAGTGGGATCCCTTGATAACGTGGGCCACTTGCCTG
CAGGAGGTGCCGTGAAGACTGAGGGCGGTGGCAGTGAGGCCCTTCCGTGTCCAGGCCCCCCCGCTGGGGA
GGAGCCAGTCATCCCTGAGGCTGCGCCTGACGCTGGCGCCCCTACTTCAGCCAGTGGCCTCAGTGGCCAC
ACCACCCTGTCAGGGGGTGGTGACCAAAGGGAGCCCCAGACCTTGGACAGCCAGATCCAGGAGACAAATT
GA

Translation (933 aa):
MSLPEKQPAALTAALAAEDEQLSKGNPPECGMDSRKEIGQDGFEWQRTEGKLNEIGLNVSMDGQLKDRLV
KNSSFLEQNKLGFFEGKLDKELSIEKPNKAYQETSGHLESGYVISGTCQPSEGNLVHQKAAEFHPGLTEG
KDKAATVQGKVAGKSGLEIKSQPDLNFPGAADTLTQHGEEQETSAWNANFYSVTQSPQAATPGKEKNGLV
SSCSVTGVMSDNSGQLNNKSPLLVAITHPDPTSEHLPTTSPPITMVEFTQENLNAGQDKELEKLRSSEEG
PMLDQVPQQKKAIRRALSECYHLSVPPAVNLVDKYPELPAREELPSDLLPPTSSPMPSPMPRKLGVPAMR
RSMTVAEDQSASCRLSAGELASLSASQVPTALTFEEPVAKEREEQIHFSNDSNSSGKKELGIAGLYLHSK
LEQIPEGSHKGKGQENTGETRVDSCPFICLGGEKQLMALAGKKEIEVTATQSIPSLLLEETPRDGVSRQE
EAKAAVGVTGNDITTPPNKEPPPSPEKKAKPLATTQPAKTSTSKAKTQPTSLPKQPAPTTSGGLNKKPMS
LASGSVPAAPHKRPAAATATARPSTLPARDVKPKPITEAKVAEKRTSPSKPSSAPALKPGPKTTPTVSKA
TSPSTLVSTGPSSRSPATTLPKRPTSIKTEGKPADVKRMTAKSASADLSRSKTTSASSVKRNTTPTGAAP
PAGMTSTRVKPMSAPSRSSGALSVDKKPTSTKPSSSAPRVSRLATTVSAPDLKSVRSKVGSTENIKHQPG
GGRVQIVSKKVSYSHIQSKCGSKDNIKHVPGGGNVQIQNKKVDISKVSSKCGSKANIKHKPGGGDVKIES
QKLNFKEKAQAKVGSLDNVGHLPAGGAVKTEGGGSEALPCPGPPAGEEPVIPEAAPDAGAPTSASGLSGH
TTLSGGGDQREPQTLDSQIQETN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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