NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS80988.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
80988.1 Public Mus musculus 9 Rnf214 23 108 98 CCDS HistoryNCBI Gene:235315Re-query CCDS DB by CCDS ID:80988.1Re-query CCDS DB by GeneID:235315See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 80988.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000161203.7 ENSMUSP00000123995.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000161203.7Link to Ensembl Protein Viewer:ENSMUSP00000123995.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000161203Re-query CCDS DB by Protein ID:ENSMUSP00000123995
Original member Current member NCBI NM_001310840.2 NP_001297769.1 Accepted alive Link to Nucleotide Sequence:NM_001310840.2Link to Protein Sequence:NP_001297769.1Re-query CCDS DB by Nucleotide ID:NM_001310840Re-query CCDS DB by Protein ID:NP_001297769Link to BLAST:NP_001297769.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001297769.1 548 Q8BFU3-2 548 100% 0 0

Chromosomal Locations for CCDS 80988.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 45864933 45864998 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 45866566 45866661 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 45866947 45867051 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 45867500 45867632 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 45867739 45868115 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 45869179 45869277 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 45869454 45869544 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 45871546 45871634 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 45871871 45871967 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 45890804 45890943 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 45896085 45896225 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 45898432 45898491 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 45900211 45900256 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 45904806 45904912 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1647 nt):
ATGGCGGCCTCTGAGGTAGCTGGCCTTGGGGCCGGTACCCCGAGTCCTTCGGAATCTTCTGCTTTGTGTG
CATCCAAGTCCGATGAATCTCTCCCAGATGGCCTAAGCCCCAAAGACTCTGCCCAGAAACAGAAGAACTT
GTCTCCGCCGAGTACTGACTTTAAAACAGCAGATTCGGAAGTAAACACAGACCAAGATATTGAAAAGAAT
CTGGACAAAATGATGACAGAGAGAACTCTGTTGAAGGAGCGTTACCAAGAAGTCCTGGACAAGCAGAGGC
AGGTGGAGAGTCAGCTCCAGGTGCAGTTAAAGCAGCTTCAGCAAAGGCGAGAAGAAGAAATGAAGAATCA
CCAGGAGATACTAAAGGCCATTCAGGATGTGACCATAAAGCGAGAAGAAACCAAGAAGAAGATAGAGAAA
GAAAAGAAGGAGTTCTTGCAGAAGGAGCAGGACCTGAAAGCTGAAATCGAGAAGCTCTGTGAGAAGGGCA
GAAGAGAAGTGTGGGAAATGGAACTGGATAGACTCAAGAACCAGGATGGTGAAATCAACCGGAATATTAT
GGAAGAGACAGAGCGGGCCTGGAAAGCAGAGATACTGTCACTAGAGAGCCGGAAGGAGTTGCTGGTGTTG
AAACTGGAAGAAGCAGAAAAAGAAGCAGAACTTCATCTGACTTACCTCAAGTCAACTCCTCCAACACTAG
AGACAGTTCGTTCCAAACAAGAGTGGGAGACAAGACTGAATGGAGTTCGGATAATGAAAAAGAATGTTCG
GGACCAGTTTAATAGTCATATCCAGCTAGTGAGGAATGGAGCCAAGCTGAGCAGCCTTCCTCAGATCCCT
ACCCCAACTTTGCCTCCACCACCCTCAGAGGCAGATTTCATGCTTCAAGTATTTCAGCCCAGTCCCTCTC
TGACCCCTCGGATGCCCTTCTCTATCGGGCAGGTCACTATGCCTATGGTTATGCCCAGTGCGGATCCTCG
CTCTTTGTCTTTTCCGATCTTGAACCCTGCCCTTTCCCAGTCCAGCCAACCTTCCCCACCTCTTCCTGGC
TCACATGGGAGAAATAGCCCTGGCTTGGGTTCCCTGGTCAGCCCTCATGGTCCACACATGCCTCCTGCTG
CCTCCATCCCGCCTCCCCCAGGCTTGGGCGGTATTAAGGCTTCTTCTGAAACTCCCCGGCCCCAACCAGT
AGACAAACTGGAGAAGATCCTGGAGAAGCTGCTGACTCGGTTCCCACAGTGCAATAAGGCCCAGATGACC
AACATTCTTCAGCAAATCAAGACAGCACGTACCACCATGGCGGGCCTGACCATGGAGGAACTAATCCAAC
TGGTAGCCGCACGACTGGCAGAGCATGAACGGGTGGCATCAAGCACTCAGCCACTTGGTCGGATCCGGGC
TTTGCACCCTGCTCCTCTGGCCCAAATCAGTCCCCCAATGTTCTTGCCTTCTGCCCAAGTTTCATACCCT
GGAAGGTCTTCACATGCTCCACCCACTTGTAAACTGTGTCTGATGTGTCAGAAACTTGTCCAGCCCAGTG
AGCTGCACCCGATGGCCTGCACCCACGCACTGCACAAGGAGTGTATCAAATTCTGGGCCCAGACCAACAC
AAATGACACTTGTCCCTTTTGCCCAACTCTTAAATGA

Translation (548 aa):
MAASEVAGLGAGTPSPSESSALCASKSDESLPDGLSPKDSAQKQKNLSPPSTDFKTADSEVNTDQDIEKN
LDKMMTERTLLKERYQEVLDKQRQVESQLQVQLKQLQQRREEEMKNHQEILKAIQDVTIKREETKKKIEK
EKKEFLQKEQDLKAEIEKLCEKGRREVWEMELDRLKNQDGEINRNIMEETERAWKAEILSLESRKELLVL
KLEEAEKEAELHLTYLKSTPPTLETVRSKQEWETRLNGVRIMKKNVRDQFNSHIQLVRNGAKLSSLPQIP
TPTLPPPPSEADFMLQVFQPSPSLTPRMPFSIGQVTMPMVMPSADPRSLSFPILNPALSQSSQPSPPLPG
SHGRNSPGLGSLVSPHGPHMPPAASIPPPPGLGGIKASSETPRPQPVDKLEKILEKLLTRFPQCNKAQMT
NILQQIKTARTTMAGLTMEELIQLVAARLAEHERVASSTQPLGRIRALHPAPLAQISPPMFLPSAQVSYP
GRSSHAPPTCKLCLMCQKLVQPSELHPMACTHALHKECIKFWAQTNTNDTCPFCPTLK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH