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Report for CCDS80922.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
80922.1 Public Mus musculus 8 Kctd19 23 108 98 CCDS HistoryNCBI Gene:279499Re-query CCDS DB by CCDS ID:80922.1Re-query CCDS DB by GeneID:279499See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 80922.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000167294.7 ENSMUSP00000130831.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000167294.7Link to Ensembl Protein Viewer:ENSMUSP00000130831.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000167294Re-query CCDS DB by Protein ID:ENSMUSP00000130831
Original member Current member NCBI NM_001301173.1 NP_001288102.1 Accepted alive Link to Nucleotide Sequence:NM_001301173.1Link to Protein Sequence:NP_001288102.1Re-query CCDS DB by Nucleotide ID:NM_001301173Re-query CCDS DB by Protein ID:NP_001288102Link to BLAST:NP_001288102.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001288102.1 927 Q562E2-1 927 100% 0 0

Chromosomal Locations for CCDS 80922.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 105382956 105383069 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 105384731 105384832 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 105385023 105385177 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 105385330 105385521 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 105386750 105387377 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 105387766 105387880 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 105388191 105388274 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 105388465 105388607 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 105389044 105389147 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 105390280 105390440 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 105391873 105392083 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 105393826 105393957 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 105395271 105395462 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 105396330 105396480 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 105408328 105408624 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 105413454 105413456 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2784 nt):
ATGGAGGAGCCTGGCGGGCTCCATGAGTCAGCAGAGGATTTGTTTCACTTCAATGTCGGGGGCTGGCATT
TCTCAGTTCCCAGGAGCAAACTTGCTCAGTTCCCAGACTCGCTGTTGTGGAAAGAGGCTTCAGCCCTGAC
CTCTTCAGAGAACCAGCGGCTCTTCATTGACAGAGACGGCTCCACGTTTAGGCATGTGCACTATTACCTC
TACACGTCCAAGCTCTCCTTCTCCAGTTGTGCAGAACTGAACTTGCTCTATGAGCAAGCCCTGGGTTTGC
AGCTGATGCCCTTGCTTCAGACCCTAGATAACCTGAAGGAAGGGAGACACCACCTCCGTGTGCGGCCTGC
CGACATTCCTGTGGCTGAGAGAGCATCCCTGAACTACTGGCGGACATGGAAGTGTATCAGCAAGCCCTCG
GATTTTCCAATAAAAAGCCCCGCCTTCACAGGTCTTCATGACAAGGCCCCTTTGGGACTCATGGACACAC
CGCTGTTGGACACAGAAGAGGAAGTGCACTACTGCTTCTTACCCCTCGACTTGGTGGCCAAGTACCCAAG
CCTAGTGACCGAAGACAATCTGCTGTGGCTGGCTGAAACGGTGGCCCTGATCGAGTGCGAATGCAGCGAG
TTCCGCTTCATTGTGAATTTTCTACGCTCACACAAGATTTTACTACCAGATAACTTCTCCAACATAGATG
TGTTAGAAGCAGAAGTAGAAATTCTGGAAATCCCTGAGCTTACAGAAGCTGTACGGTTGTACCGGATGAA
TATGGGTGGCTGTTCCCGGACCTCCTGCCCACCTCTAAGTCCTGGAAAGGGGGGTCGTACAGCCAGTGTG
GAGTCTGTGAAACCACTGTACTTGATGGCCCTGGGCCTGCTGGTCAAGTATCCAGACTCTGCACTGGGAC
AGCTGCGCATCGAGAGCACGCTGGACGGAAGCAGACTATACATCACAGGGAACGGGGCCCTTTTCCAGCA
CGTCAGGAACTGGCTGGGCACTTGTCGGCTGCCCCTGACTGAGACCATCTCCGAGGTGTATGAGCTCTGC
GCCTTCCTGGACAAGAGGGACATCACCTACGAGCCAATGAAAGTGGCTCTGAAGACTCATCTGGAGCCAA
GGACTTTGCTGCCCGTGGATGTGCTCAGTGAGGAGTGGACAGCTGAGGTCACGATATACTCACCACAGCA
GATCATCAAGCTTTATGTTGGAAGCCATTGGTATGCAACGACCCTGCAGACCCTGATGAAGTACCCAGAA
CTGCTATCCAACACTCAGAGAGTGTACTGGATCGCCTACGGACAGACCTTGCTCATTCACGGGGACGGCC
AAATGTTCCGACACATTCTCAACTTCCTGAGACTTGGAAAACTGTTTTTACCATCAGAATTTAAGGAATG
GCCTCTCTTCTGCCAGGAGGTGGAGGAGTATCATATTCCAGCCCTCTCAGAAGCCCTGGCACAATGCGAA
GCATACAAGTCATGGACTCAGGAGAAAGAATCTGAAAATGAAGAAGCTTTTCCCATTAGGAAGCTGCATG
TGGTGACCGAAGGGACAGGGCCAATGGCAGAGTTCAGCAGAGATGCCAAGGAAACCACAGCCTGCATGCC
TGTGGACTTCCAGGAATGCAGTGACAGGACTCCATGGAACAAGGCCAAAGGGAACCTGACCAGGTCCAGC
CAGATGGAAGAGGCTGAGCAGTATACCCGGACTATTCAGGTCTCCCTCTGCAGAAATGCCAAGAGGGGAG
GCAATCCCAGCACATACTCACACTGCTCTGGTTTATGTGCCAACCCCAGACATTGGGGAGGTCACTCTGA
GAGTCCCCCCAAGAAGAAGTGCACCACTATAAACCTCACACAGAAACCTGATGCCAAAGACCCTCCTGTC
ACCCCCATGCAAAAACTCATATCTTTAGTCAGGGAATGGGACATGGTCAACTGTAAACAGTGGGAATTCC
AGCCACTGCCAGCCTCCAGGAGCAGCTCTGTGGAGGAGGCTAGCCTGCATGTCCCCTCGGGAAGTGAGGC
TGCTCCGCAGCCTGGTACCTCAGCTGCTTGGAAAGCTCATTCCATAACCTCTGAGAAGGATGCTGGTCCC
CAGACTGGACCCGGAGCTGGAGTGAAAGACAAGGGTCCAGAGCCAACCTTTAAGCCATACTTCCCTACAA
AAAGAGCTATTACCCTAAAGGACTGGGGCAAGCAGAGGCCCAAGGACAGAGAAAGCCCTGCTCCTGAGCA
GCCTCTGCCTAATGCTAACGGGACCGACAATCCAGGGGCCATCCTCAAAGTGGCTCACCCCCCTGTGGTG
GGTAATGATGGCTCCTGCATGTTCTTTGAAGACAGCATTATCTACACCACCCAAATGGATAACATCAAGC
ATACATCACTCACAGCCAGCCCCCAACTTCGAGAAGTGACTTTTCTGAGCTTCTCTCTGTCCTGGGAGGA
GATGTTTTATGCACAGAAATGTCACCGCTTCCTGACCGACATCATCTTGGATTCCATCAGGCAAAAGGAT
CCCAAAGCTATCACAGCCAAGGTGGTGTCTCTGGCCTACCGACTGTGGACACTGAACATCAGCCCCAAGC
AGTTCGTGGTGGATCTGCTGGCCATCGCTGGCTTCAAGGATGACCGGCACACTCAGGAGCGTCTGTACAG
TTGGGTAGAGCTCACACTGCCTTTCGCCAGAAAATATGGCCGTTGCGTGGACCTGCTCATCCAGAGGGGA
CTGTCCAGGTCTGTCTCTTATTCAGTCCTGGGCAAGTATTTACACGAGGGCTAG

Translation (927 aa):
MEEPGGLHESAEDLFHFNVGGWHFSVPRSKLAQFPDSLLWKEASALTSSENQRLFIDRDGSTFRHVHYYL
YTSKLSFSSCAELNLLYEQALGLQLMPLLQTLDNLKEGRHHLRVRPADIPVAERASLNYWRTWKCISKPS
DFPIKSPAFTGLHDKAPLGLMDTPLLDTEEEVHYCFLPLDLVAKYPSLVTEDNLLWLAETVALIECECSE
FRFIVNFLRSHKILLPDNFSNIDVLEAEVEILEIPELTEAVRLYRMNMGGCSRTSCPPLSPGKGGRTASV
ESVKPLYLMALGLLVKYPDSALGQLRIESTLDGSRLYITGNGALFQHVRNWLGTCRLPLTETISEVYELC
AFLDKRDITYEPMKVALKTHLEPRTLLPVDVLSEEWTAEVTIYSPQQIIKLYVGSHWYATTLQTLMKYPE
LLSNTQRVYWIAYGQTLLIHGDGQMFRHILNFLRLGKLFLPSEFKEWPLFCQEVEEYHIPALSEALAQCE
AYKSWTQEKESENEEAFPIRKLHVVTEGTGPMAEFSRDAKETTACMPVDFQECSDRTPWNKAKGNLTRSS
QMEEAEQYTRTIQVSLCRNAKRGGNPSTYSHCSGLCANPRHWGGHSESPPKKKCTTINLTQKPDAKDPPV
TPMQKLISLVREWDMVNCKQWEFQPLPASRSSSVEEASLHVPSGSEAAPQPGTSAAWKAHSITSEKDAGP
QTGPGAGVKDKGPEPTFKPYFPTKRAITLKDWGKQRPKDRESPAPEQPLPNANGTDNPGAILKVAHPPVV
GNDGSCMFFEDSIIYTTQMDNIKHTSLTASPQLREVTFLSFSLSWEEMFYAQKCHRFLTDIILDSIRQKD
PKAITAKVVSLAYRLWTLNISPKQFVVDLLAIAGFKDDRHTQERLYSWVELTLPFARKYGRCVDLLIQRG
LSRSVSYSVLGKYLHEG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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