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Report for CCDS80871.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
80871.1 Public Mus musculus 8 Dctn6 23 108 98 CCDS HistoryNCBI Gene:22428Re-query CCDS DB by CCDS ID:80871.1Re-query CCDS DB by GeneID:22428See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 80871.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000118811.7 ENSMUSP00000113280.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000118811.7Link to Ensembl Protein Viewer:ENSMUSP00000113280.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000118811Re-query CCDS DB by Protein ID:ENSMUSP00000113280
Original member Current member NCBI NM_001293758.1 NP_001280687.1 Accepted alive Link to Nucleotide Sequence:NM_001293758.1Link to Protein Sequence:NP_001280687.1Re-query CCDS DB by Nucleotide ID:NM_001293758Re-query CCDS DB by Protein ID:NP_001280687Link to BLAST:NP_001280687.1

Chromosomal Locations for CCDS 80871.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 34090744 34090842 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 34092511 34092653 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 34093629 34093676 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 34094884 34094972 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 34097189 34097294 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 34106342 34106406 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 34107575 34107582 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (558 nt):
ATGTCGGGTGTGAAGATTGCTCCCGGAGCAGTAGTGTGTGTAGAAAGCGAAATCAGAGGAGATGTAACCA
TAGGCCCGAGGACGGTGATCCACCCTAAAGCACGAATTATCGCGGAGGCCGGGCCAATAATCATCGGTGA
AGGAAACCTGATAGAAGAGCAGGCCCTCATCATAAATGCTCATCCGGATAACATCATCCCAGATACTGAA
GATACAGAGCCCAAACCTATGATTATTGGCACCAACAACGTATTTGAAGTGGGCTGTCATTCCCAAGCCA
TGAAAATGGGAGACAATAATGTCATTGAGTCAAAAGCCTACGTGGGCAGGAATGTCATCCTGACCAGCGG
CTGCATCATTGGGGCTTGCTGCAGCCTCAACACCTTTGAAGCCATCCCTGAGAACACGGTGATCTACGGC
GCGGACTGCCTGCGGCGGGTACAGACAGAGCGGCCACAGCCCCAGACTCTACAACTGGATTTCCTGATGA
AGATCTTGCCCAATTACCACCACCTGAAGAAGACGATGAAAGGCAGCTCAACCCCAGTTAAGAACTGA

Translation (185 aa):
MSGVKIAPGAVVCVESEIRGDVTIGPRTVIHPKARIIAEAGPIIIGEGNLIEEQALIINAHPDNIIPDTE
DTEPKPMIIGTNNVFEVGCHSQAMKMGDNNVIESKAYVGRNVILTSGCIIGACCSLNTFEAIPENTVIYG
ADCLRRVQTERPQPQTLQLDFLMKILPNYHHLKKTMKGSSTPVKN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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