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Report for CCDS80397.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
80397.1 Public Mus musculus 5 Anapc5 23 108 98 CCDS HistoryNCBI Gene:59008Re-query CCDS DB by CCDS ID:80397.1Re-query CCDS DB by GeneID:59008See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 80397.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000200645.4 ENSMUSP00000142922.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000200645.4Link to Ensembl Protein Viewer:ENSMUSP00000142922.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000200645Re-query CCDS DB by Protein ID:ENSMUSP00000142922
Original member Current member NCBI NM_001042491.2 NP_001035956.1 Accepted alive Link to Nucleotide Sequence:NM_001042491.2Link to Protein Sequence:NP_001035956.1Re-query CCDS DB by Nucleotide ID:NM_001042491Re-query CCDS DB by Protein ID:NP_001035956Link to BLAST:NP_001035956.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001035956.1 727 Q8BTZ4-2 727 100% 0 0

Chromosomal Locations for CCDS 80397.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 122787807 122788018 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 122788302 122788464 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 122791608 122791755 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 122791827 122791934 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 122793437 122793558 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 122794417 122794491 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 122799339 122799474 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 122800451 122800593 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 122802130 122802219 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 122802823 122802904 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 122806245 122806435 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 122807300 122807401 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 122814549 122814615 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 122817821 122818004 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 122818854 122818963 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 122819608 122819687 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 122820980 122821150 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2184 nt):
ATGATGACCAACGGGGTAGTGCACGCCAACTTGTTTGGCATCAAGGACTGGGTGACGCCCTATAAGATCG
CCGTCCTGGTGCTGCTCAACGAGATGGGCCGCACGGGCGAGGGCGCCGTCAGCCTCGTGGAGCGGCGGAA
GCTCAACCAGCTGCTCCTGCCCCTGCTGCAGGGCCCAGATATTACACTGTCAAAGCTGTACAAGCTAATT
GAAGAATCGTGTCCTCAGCTGGCAAATTCAGTGCAGATCAGAATCAAGCTCATGGCTGAAGGCGAACTGA
AGGATATGGAACAATTTTTTGATGACCTTTCAGATTCTTTTTCTGGAACTGAACCAGAGGTTCACAAAAC
GAGTGTAGTAGGTCTGTTCCTGCGCCACATGATCTTGGCCTACAGTAAGCTTTCTTTCAGTCAAGTGTTT
AAGCTGTACACTGCCCTCCAGCAGTACTTCCAGAACGGGGAGAAAAAGACGGTGGAAGATGCTGATATGG
ACCGAGAGGATGGAGAGAAACAGATGGAGAAGGAAGAGCTCGACGTGTCCGTGAGAGAAGAGGAAGTATC
TTGCAGTGGTCCTCTGTCCCAAAAACAAGCGGAATTTTTTCTCTCTCAGCAGGCCGCTTTGTTGAAGAAT
GATGAGACTAAAGCCCTCACCCCAGCTTCCTTGCAGAAGGAATTGAACAACCTGTTGAAATTTAATCCTG
ATTTTGCTGAAGCTCATTACCTCAGCTACTTAAACAACCTCCGTGTTCAAGATGTTTTCAGCTCAACACA
CAGCCTCCTGCATTATTTTGACCGCCTGATTCTCACTGGAGCGGAGGGCAAAAGTAATGGGGAAGAGGGT
TATGGCCGGAGCCTGAGATACGCTGCTCTCAACCTGGCTGCCCTGCACTGCCGCTTCGGTCACTATCAAC
AGGCAGAGCTCGCCCTGCAGGAGGCAATTAGGATTGCCCAGGAGTCCAACGATCACGTGTGTCTGCAGCA
CTGTTTGAGCTGGCTTTATGTGCTGGGGCAGAAGAGAGCCGATAGCTATGTTCTGCTGGAGCACTCTGTG
AAGAAAGCAGTACATTTTGGGTTACCGAGAGCTTTTGCTGGGAAGACGGCCAACAAACTGATGGATGCCC
TAAAGGACTCTGACCTCCTGCACTGGAAACACAGCCTGTCAGAACTTATCGATATCAGCATTGCACAGAA
AACGGCCATCTGGAGGCTGTACGGCCGCAGCACCATGGCACTGCAACAAGCCCAGATGTTGCTGAGCATG
AACAGCCTGGAGTCGCTGAATGCGGGTGTGCAGCAGAACAATACTGAGTCCTTTGCCGTCGCTCTCTGCC
ATCTTGCAGAGCTCCATGCAGAACAGGGCTGTTTTGCGGCTGCTGGTGAAGTATTAAAGCACTTGAAGGA
CCGATTTCCACCCAACAGTCAGCACGCCCAGTTATGGATGCTGTGTGATCAAAAAATACAGTTTGACAGA
GCAATGAATGATGGCAAATTCCATTTGGCTGATTCACTTGTTACAGGAATCACAGCGCTTAATGGCATAG
AAGGTGTATACAGGAAAGCAGTCGTACTGCAGGCTCAGAACCAAATGACAGAGGCACACAAGCTACTACA
GAAGTTGCTGACGTACTGTCAGAAGCTAAAGAACACAGAAATGGTCATCAGTGTCCTCCTATCGGTGGCA
GAGCTGTACTGGCGATCTTCGTCCCCGACCATCGCCATGCCTGTGCTCCTGGAAGCTCTGGCCCTCTCCA
AAGAATACCGATTGCAGTACTTGGCCTCCGAAACTGTGCTCAACTTGGCTTATGCCCAGCTCATCCTTGG
AATCCCGGAACAGGCCTTAACCCTTCTCCACATGGCTATCGAGCCCATCCTAGCCGACGGGGCTGTCCTG
GACAAAGGTCGTGCCATGTTCTTAGTGTCCAAGTGCCAAGTGGCTTCGGCAGCGTCCTATGACCCAGTGA
AGAAAGCGGAAGCTCTGGAAGCTGCCATTCAGAACCTCAGTGAAGCCAAGAACTACTTTGCACAAGTCGA
CTGCAGAGAGCGCATCAGGGATGTTGCTTACTTCCAGGCCAGGCTGTACCACGCTCTTGGCAAGACCCAG
GAGAGGAACCATTGTGCCATGATCTTCCGGCAGCTGCACCAGGAGTTGCCCGCCCATGGGGTGCCCTTGA
TTAACCACCTCTAG

Translation (727 aa):
MMTNGVVHANLFGIKDWVTPYKIAVLVLLNEMGRTGEGAVSLVERRKLNQLLLPLLQGPDITLSKLYKLI
EESCPQLANSVQIRIKLMAEGELKDMEQFFDDLSDSFSGTEPEVHKTSVVGLFLRHMILAYSKLSFSQVF
KLYTALQQYFQNGEKKTVEDADMDREDGEKQMEKEELDVSVREEEVSCSGPLSQKQAEFFLSQQAALLKN
DETKALTPASLQKELNNLLKFNPDFAEAHYLSYLNNLRVQDVFSSTHSLLHYFDRLILTGAEGKSNGEEG
YGRSLRYAALNLAALHCRFGHYQQAELALQEAIRIAQESNDHVCLQHCLSWLYVLGQKRADSYVLLEHSV
KKAVHFGLPRAFAGKTANKLMDALKDSDLLHWKHSLSELIDISIAQKTAIWRLYGRSTMALQQAQMLLSM
NSLESLNAGVQQNNTESFAVALCHLAELHAEQGCFAAAGEVLKHLKDRFPPNSQHAQLWMLCDQKIQFDR
AMNDGKFHLADSLVTGITALNGIEGVYRKAVVLQAQNQMTEAHKLLQKLLTYCQKLKNTEMVISVLLSVA
ELYWRSSSPTIAMPVLLEALALSKEYRLQYLASETVLNLAYAQLILGIPEQALTLLHMAIEPILADGAVL
DKGRAMFLVSKCQVASAASYDPVKKAEALEAAIQNLSEAKNYFAQVDCRERIRDVAYFQARLYHALGKTQ
ERNHCAMIFRQLHQELPAHGVPLINHL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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