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Report for CCDS80270.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
80270.1 Public Mus musculus 5 Stx18 23 108 98 CCDS HistoryNCBI Gene:71116Re-query CCDS DB by CCDS ID:80270.1Re-query CCDS DB by GeneID:71116See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 80270.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000042146.14 ENSMUSP00000038205.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000042146.14Link to Ensembl Protein Viewer:ENSMUSP00000038205.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000042146Re-query CCDS DB by Protein ID:ENSMUSP00000038205
Original member Current member NCBI NM_001289536.1 NP_001276465.1 Accepted alive Link to Nucleotide Sequence:NM_001289536.1Link to Protein Sequence:NP_001276465.1Re-query CCDS DB by Nucleotide ID:NM_001289536Re-query CCDS DB by Protein ID:NP_001276465Link to BLAST:NP_001276465.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001276465.1 308 Q8VDS8-2 308 100% 0 0

Chromosomal Locations for CCDS 80270.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 38039332 38039499 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 38092513 38092580 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 38104878 38104993 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 38106826 38106892 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 38116085 38116197 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 38121211 38121299 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 38126932 38126990 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 38128044 38128113 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 38135222 38135302 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 38136263 38136358 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (927 nt):
ATGGCGGTGGACATCACACTGCTCTTCCGGGCTAGCGTCAAGACAGTGAAGACGCGGAATAAGGCTCTGG
GAGTGGCCGTGGGTGGCGGGGCCGATGGCAGCCGGGACGAGCTGTTCCGCAGAAGCCCTCGGCCCAAGGG
AGACTTCTCCAGCCGGGCCCGTGAAGTGATTTCTCACATTGGGAAGCTGAGAGATTTTCTCCTGGAGCAC
AGGAAGGAGTATATTAATGCCTACAGCCACACCATGTCTGACTATGGGAGGATGACAGACACAGAGCGAG
ACCAGATAGACCAGGATGCTCAGATATTCATAAGGACCTGTTCAGAAGCAATCCATCAACTCAGAACAGA
AGGAGTGTGTAAGCTTTACTCTGAACAAAGAGCCATCCGAGTGAAGCGCGTGGTGGACAAGAAAAGACTA
TCTAAGCTGGAACCTGAGCCACATACCAAGAGGAAAGACTCCACATCTGAGAAAGCCCCTCAGAACGCTT
CCCAGGACTCTGAAGGAAAGCCTGCTGCTGAGGAGCTGCCAGAAAAGCCTTTGGCTGAATCACAGCCCGA
ACTGGGAACCTGGGGCGATGGCAAGGGTGAAGATGAGCTGTCTCCAGAAGAGATACAGATGTTTGAACAA
GAAAATCAGCGACTCATTGGTGAAATGAACAGCTTGTTTGACGAAGTGAGGCAAATCGAAGGGAAAGTCG
TTGAAATTTCCAGACTCCAAGAGATATTCACCGAAAAGGTTTTGCAACAGGAAACTGAGATCGACAGCAT
TCACCAGTTAGTCGTGGGGGCAACTGAAAATATTAAGGAAGGCAACGAAGACATCCGAGAGGCCATCAAA
AACAATGCAGGTTTCCGAGTGTGGATCCTCTTCTTCCTCGTGATGTGTTCCTTTTCCTTGCTCTTCCTCG
ACTGGTATGACAGCTAG

Translation (308 aa):
MAVDITLLFRASVKTVKTRNKALGVAVGGGADGSRDELFRRSPRPKGDFSSRAREVISHIGKLRDFLLEH
RKEYINAYSHTMSDYGRMTDTERDQIDQDAQIFIRTCSEAIHQLRTEGVCKLYSEQRAIRVKRVVDKKRL
SKLEPEPHTKRKDSTSEKAPQNASQDSEGKPAAEELPEKPLAESQPELGTWGDGKGEDELSPEEIQMFEQ
ENQRLIGEMNSLFDEVRQIEGKVVEISRLQEIFTEKVLQQETEIDSIHQLVVGATENIKEGNEDIREAIK
NNAGFRVWILFFLVMCSFSLLFLDWYDS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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