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Report for CCDS80077.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
80077.1 Public Mus musculus 4 Cibar1 23 108 98 CCDS HistoryNCBI Gene:68099Re-query CCDS DB by CCDS ID:80077.1Re-query CCDS DB by GeneID:68099See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 80077.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000087052.10 ENSMUSP00000084284.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000087052.10Link to Ensembl Protein Viewer:ENSMUSP00000084284.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000087052Re-query CCDS DB by Protein ID:ENSMUSP00000084284
Original member Current member NCBI NM_001310743.1 NP_001297672.1 Accepted alive Link to Nucleotide Sequence:NM_001310743.1Link to Protein Sequence:NP_001297672.1Re-query CCDS DB by Nucleotide ID:NM_001310743Re-query CCDS DB by Protein ID:NP_001297672Link to BLAST:NP_001297672.1

Chromosomal Locations for CCDS 80077.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 12153895 12153978 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 12155649 12155768 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 12157651 12157764 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 12164088 12164192 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 12168229 12168324 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 12168965 12169033 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 12170984 12171218 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 12171698 12171930 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1056 nt):
ATGCCCTCTGGTCTCCCTTGCCCTGCTCTTGACCGCCGGGGCGCGCGCCGCGTCGCCACGGAAACGCCGG
GCAGGCGGGGCGGCGCGCACTGCGCGCTCTCAGCTCCCGGTAGAAGTGGCGGCGTCGCCTGCTCCCGCGC
GCCCTGGCGGCCCGGAGCCGCGCTCGTTGGGCTCCCATCCTGGGTCCCGGGCGGCGGGAAAGGCAAGATG
TTGAGGCGCAATCTGGATGAGCGAGATGCTCAAACAAAACAACTGCAGGATGCTGTCACAAATGTGGAGA
AGCATTTTGGAGAGCTTTGCCAAATCTTTGCTGCTTATGTACGGAAAACTGCCAGGCTTCGAGACAAAGC
CGACCTCCTAGTGAACGAAATCAACCTGTATGCCTCTACCGAGACACCAAATTTAAAGCAGGGTCTGAAA
GACTTTGCTGATGAGTTTGCCAAACTTCAAGATTATCGCCAGGCAGAGGTTGAAAGACTTGAAGCCAAAG
TAGTTGAACCTTTGAAAGCTTATGGGACCATTGTAAAGATGAAGCGAGATGATCTCAAAGCAACATTAAC
AGCAAGGAATCGAGAAGCCAAACAGCTATCTCAGTTAGAAAGGACACGCCAGCGAAACCCATCTGATCGA
CATGCAGAAACTGAATTACAGAGAGCCACGATTGATGCTACCCGCACAAGTCGTCATTTGGAGGAAACTA
TTGACAATTTTGAAAAGCAGAAAATAAAGGACATAAAGAACATATTATCTGAGTTCATCACAATTGAAAT
GTTATTTCATGGAAAAGCCTTAGAGGTCTTCACTGCTGCCTACCAAAATATACAAAACATTGATGAGGAT
GAAGACCTAGAGGTTTTCCGAAATTCTCTGTATCTATCAGATTATCCATCTCGCTTAGATATTGTAAGAG
CAAATTCAAAGTCACCTCTTCAGAGATCATTGTCAACTAAGTGCACATCTGGAACTGGACAGATATCCAC
CTGCCGAACAAGGAAGGACCAACAAGTAGAAGATGAAGATGATGAAGAATTAGATGTTACAGAAGATGAA
AACTAA

Translation (351 aa):
MPSGLPCPALDRRGARRVATETPGRRGGAHCALSAPGRSGGVACSRAPWRPGAALVGLPSWVPGGGKGKM
LRRNLDERDAQTKQLQDAVTNVEKHFGELCQIFAAYVRKTARLRDKADLLVNEINLYASTETPNLKQGLK
DFADEFAKLQDYRQAEVERLEAKVVEPLKAYGTIVKMKRDDLKATLTARNREAKQLSQLERTRQRNPSDR
HAETELQRATIDATRTSRHLEETIDNFEKQKIKDIKNILSEFITIEMLFHGKALEVFTAAYQNIQNIDED
EDLEVFRNSLYLSDYPSRLDIVRANSKSPLQRSLSTKCTSGTGQISTCRTRKDQQVEDEDDEELDVTEDE
N


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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