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Report for CCDS79034.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
79034.2 Public Mus musculus 11 Osbpl7 23 108 98 CCDS HistoryNCBI Gene:71240Re-query CCDS DB by CCDS ID:79034.2Re-query CCDS DB by GeneID:71240See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 79034.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000090020.12 ENSMUSP00000087474.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000090020.12Link to Ensembl Protein Viewer:ENSMUSP00000087474.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000090020Re-query CCDS DB by Protein ID:ENSMUSP00000087474
Original member Current member NCBI NM_001310509.2 NP_001297438.2 Accepted alive Link to Nucleotide Sequence:NM_001310509.2Link to Protein Sequence:NP_001297438.2Re-query CCDS DB by Nucleotide ID:NM_001310509Re-query CCDS DB by Protein ID:NP_001297438Link to BLAST:NP_001297438.2

Chromosomal Locations for CCDS 79034.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 97052302 97052376 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 97052486 97052611 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 97052770 97052823 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 97054115 97054228 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 97054550 97054645 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 97054759 97054876 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 97055527 97055630 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 97055855 97055947 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 97056031 97056163 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 97056253 97056347 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 97056528 97056623 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 97058460 97058597 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 97059099 97059192 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 97060043 97060290 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 97060451 97060588 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 97065589 97065652 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 97065781 97065859 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 97066933 97067077 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 97067205 97067349 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 97067434 97067560 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 97067665 97067787 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 97067942 97068050 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2514 nt):
ATGGACTTCCAGGAAAGAGACACGCCCTCTTTGGCTGAGAGTACTCAGTCTTCAAAGCCCAGCAGTACCC
AGCAGGCCTCGGAGCTGTGGGAGGTGATGGAGGAGCCTCGGGGCAGGCTGGGAGCAGACGACATCATGCC
TGAGAGACAGGAAGGACACCTGCTCAAGAAGAGGAAGTGGCCTCTTAAGGGCTGGCACAAGAGGTACTTT
GTGCTGGAGGACGGGATCCTACACTATGCCACGACTCGACAAGATATCACCAAGGGGAAGGTCCACGGCT
CCATCGATGTCCGGCTATCCGTCATGTCCATCAACAAAAAGGCCCAGCGCATTGACCTCGACACAGAAGA
CAACATTTACCACCTAAAGATCAAATCTCAGGACCTGTTCCATAGCTGGGTGGCCCAGCTTCGAGCCCAC
CGCTTGGCCCAGCGCTTGGACATGCCCAGTGCCACTCATCGGAAGGCTCCTGGTACCCAGATGCTAACAG
CAGGCAGTGCTTCCGCCTTACCTGGGGTTGGACCTCGAGAGAAAGTGTCATCCTGGCTGAGGGACAGTGA
CGGGCTAGACCGATGTTCTCATGCACTCTCAGAATGCCAGGGTAAGCTGCAGGAACTACACAGACTCCTT
CAGAGCCTGGAGTCCCTACACCGCATCCCCTCTGCCCCCGTGATCCCTACACACCAGACCTCAGTGACGA
CCGAGAGACCCAAGAAAGGAAAACGAACCAGTCGCATGTGGTGCACACAGGGCTTCGCCAAGGATGACAC
CATCGGACGGGTTGGCCGTCTCCATGGCTCTGTTCCCAACCTATCTCGTTACTTGGAGTCTCGGGACACT
TCTGGCCCCCGTGGCCTGCCACCTCCAGACTATGCCCATCTGCAGCGCAGTTTCTGGGCTCTGGCCCAGA
AGGTGCACAACTCCCTCAGCAGTGTCCTGGTTGCCCTCACCACAGAACGGGACCGACTGAGAGACCTGCA
CCAGGGCTCAGAGCTGTCAAGGATGGTAGTTTCTGAGGCCCCGGATGGTCAGAGACGCCTCCACTCACTC
TCCATCTCCTCAGACACCACGGCAGACTCCTTCAGTTCCCTGAACCCGGAGGAGCAAGAAGCTCTGTACA
TGAAAGGCCGAGAGCTGACCCCCCAGCTGTCGCAGAGCAGTGTGCTGTCCCTCGCCGACTCCCACACCGA
GTTCTTTGATGCCTGTGAGGTGCTCCTCTCTGCCAGTTCTTCCGAGAATGAGGGTTCTGAGGAGGAAGAG
TCTTGTGCTAGCGAGATCACCACCAGCCTGTCTGAGGAGGTGCTGGATATCAGGGGAGCTGACCGCTATC
AAAAAGGGCCGTGTGTTCCAGGGATTGCTGTGGGACCTCCTCGCCGCCGCTGCCTGCCAGCTGCCAGTGG
GCCTGGGACAGACGTGAGCCTGTGGAATATCCTCCGCAACAACATCGGCAAAGACCTGTCCAAGGTGTCG
ATGCCTGTGCAGCTCAACGAACCGCTCAACACACTGCAGAGGCTCTGCGAGGAGTTGGAATATAGCAGCC
TCCTGGACCAGGCCAGCCGCATGGCCGACCCCTGCGAGCGCATGGTGTACATCGCAGCCTTTGCTGTCTC
TGCCTACTCCTCCACGTACCACCGGGCGGGATGCAAGCCCTTCAACCCGGTCCTGGGAGAGACCTACGAG
TGTGAGCGGCCTGACCGGGGTTTCCGTTTTATCAGCGAGCAGGTCTCCCACCATCCTCCGATCTCCGCGT
GTCACGCAGAATCTGAGAACTTCATCTTCTGGCAAGACATGAAATGGAAGAACAAGTTCTGGGGCAAATC
CCTGGAGATCGTGCCTGTGGGGACAGTCAATGTCAGTCTGCCCAGGTTTGGGGACCACTTTGAGTGGAAC
AAGGTGACGTCCTGTATTCACAACATCCTGAGTGGCCAGCGCTGGATCGAGCACTATGGGGAAGTGCTTA
TCCGAAACACACAAGATAGCTCCTGCCACTGCAAAATCACCTTTTGCAAGGCCAAGTACTGGAGTTCCAA
CATCCATGAGGTACAAGGTGCGGTGCTTAGTAGGAGTGGCCGCGTCCTCCACCGCCTCTTCGGGAAGTGG
CATGAGGGGCTGTACCGAGGCCCCCCACCGGGTGGGCAGTGCATTTGGAAACCCAATTCGATGCCTCCAG
ACCATGAGCGAAACTTCGGGTTCACTCAGTTTGCCCTGGAACTGAATGAGCTGACGTCAGAGCTGAAGCG
GACCCTGCCTTCCACTGACACACGGCTCCGACCTGACCAGAGGTACCTGGAGGAGGGGAACATACAGGCT
GCTGAGGCCCAGAAGAGAAGGATAGAGCAGCTCCAGCGAGACCGGAGAAGGGTGATGGAAGAAAATAACA
TAGTCCACCAGGCGCGCTTCTTCAGGCGACAGACAGACAGCAGCGGCAAGGAGTGGTGGGTGACCAACCA
TACTTACTGGAGGCTTCGAGCTGAGCCAGGCTATGGGAACCTGGATGGGGCCGTGCTCTGGTAA

Translation (837 aa):
MDFQERDTPSLAESTQSSKPSSTQQASELWEVMEEPRGRLGADDIMPERQEGHLLKKRKWPLKGWHKRYF
VLEDGILHYATTRQDITKGKVHGSIDVRLSVMSINKKAQRIDLDTEDNIYHLKIKSQDLFHSWVAQLRAH
RLAQRLDMPSATHRKAPGTQMLTAGSASALPGVGPREKVSSWLRDSDGLDRCSHALSECQGKLQELHRLL
QSLESLHRIPSAPVIPTHQTSVTTERPKKGKRTSRMWCTQGFAKDDTIGRVGRLHGSVPNLSRYLESRDT
SGPRGLPPPDYAHLQRSFWALAQKVHNSLSSVLVALTTERDRLRDLHQGSELSRMVVSEAPDGQRRLHSL
SISSDTTADSFSSLNPEEQEALYMKGRELTPQLSQSSVLSLADSHTEFFDACEVLLSASSSENEGSEEEE
SCASEITTSLSEEVLDIRGADRYQKGPCVPGIAVGPPRRRCLPAASGPGTDVSLWNILRNNIGKDLSKVS
MPVQLNEPLNTLQRLCEELEYSSLLDQASRMADPCERMVYIAAFAVSAYSSTYHRAGCKPFNPVLGETYE
CERPDRGFRFISEQVSHHPPISACHAESENFIFWQDMKWKNKFWGKSLEIVPVGTVNVSLPRFGDHFEWN
KVTSCIHNILSGQRWIEHYGEVLIRNTQDSSCHCKITFCKAKYWSSNIHEVQGAVLSRSGRVLHRLFGKW
HEGLYRGPPPGGQCIWKPNSMPPDHERNFGFTQFALELNELTSELKRTLPSTDTRLRPDQRYLEEGNIQA
AEAQKRRIEQLQRDRRRVMEENNIVHQARFFRRQTDSSGKEWWVTNHTYWRLRAEPGYGNLDGAVLW


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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