NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS78836.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
78836.1 Public Mus musculus 10 Prmt2 23 108 98 CCDS HistoryNCBI Gene:15468Re-query CCDS DB by CCDS ID:78836.1Re-query CCDS DB by GeneID:15468See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 78836.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000099572.9 ENSMUSP00000097167.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000099572.9Link to Ensembl Protein Viewer:ENSMUSP00000097167.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000099572Re-query CCDS DB by Protein ID:ENSMUSP00000097167
Original member Current member NCBI NM_001302965.1 NP_001289894.1 Accepted alive Link to Nucleotide Sequence:NM_001302965.1Link to Protein Sequence:NP_001289894.1Re-query CCDS DB by Nucleotide ID:NM_001302965Re-query CCDS DB by Protein ID:NP_001289894Link to BLAST:NP_001289894.1

Chromosomal Locations for CCDS 78836.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 76207761 76207793 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 76208412 76208673 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 76209338 76209474 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 76210398 76210527 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 76217314 76217489 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 76220998 76221162 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 76222449 76222610 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 76225288 76225470 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 76226190 76226315 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 76236712 76236765 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1428 nt):
ATGGAGGCACCAGGAGAAGGTCCCTGCAGCGAGTCACAGGTCATCCCGGTTCTGGAGGAAGACCCCGTGG
ACTATGGCTGTGAGATGCAGCTCCTGCAGGATGGGGCACAGTTACAGCTGCAGCTGCAACCTGAGGAGTT
CGTGGCCATTGCAGACTATACGGCCACCGATGAGACACAGCTCAGCTTTTTGAGAGGAGAAAAAATTCTT
ATCCTGAGACAAACCACGGCGGACTGGTGGTGGGGCGAGCGCGCAGGCTGCTGTGGTTACATCCCTGCGA
ACCACCTCGGCAAGCAACTGGAGGAATACGACCCGGAGGACACCTGGCAGGACGAGGAGTACTTCGACAG
CTATGGAACTCTGAAACTTCACCTGGAAATGTTGGCTGACCAGCCTCGGACCACCAAGTACCACAGCGTC
ATCCTGCAGAACAAGGAGTCCCTGAAGGACAAGGTCATCCTGGATGTGGGCTGCGGCACCGGCATCATCA
GCCTCTTCTGCGCACACCATGCCCGGCCCAAGGCGGTCTACGCAGTGGAGGCCAGTGACATGGCCCAGCA
CACCAGCCAGCTGGTCCTGCAGAATGGCTTTGCTGACACAATCACTGTGTTCCAGCAGAAGGTGGAGGAC
GTGGTGCTGCCCGAGAAGGTGGACGTGCTGGTGTCTGAGTGGATGGGGACCTGTCTGCTGTTTGAGTTCA
TGATCGAGTCCATCCTGTATGCCCGGGACACATGGTTAAAGGGGGACGGCATCATCTGGCCAACCACGGC
CGCACTGCATCTGGTGCCCTGCAGCGCCGAGAAAGACTACCACAGCAAGGTGCTCTTCTGGGACAACGCG
TACGAGTTCAACCTCAGTGCACTCAAGTCTTTAGCAATCAAGGAGTTCTTTTCAAGGCCAAAGTCGAATC
ATATCTTGAAGCCAGAAGACTGTCTCTCTGAGCCATGCACAATCTTGCAGCTGGACATGAGAACTGTGCA
GGTCCCTGACCTGGAGACCATGCGTGGCGAACTGCGATTTGACATCCAGAAGGCTGGGACCCTGCACGGC
TTCACAGCTTGGTTCAGTGTGTACTTCCAGAGCCTGGAGGAGGGCCAGCCTCAGCAGGTGCTCAGCACAG
GCCCGCTGCACCCGTTCCTGGGCAGGACAGGCTGTCAGTGCAGAGGACCTCGTTGGAGCTGCCAGATGAG
GCCTGTAGGTGACCGCATGCTCCTGTCTTGCAGCACCACACACTGGAAGCAGACCTTGTTCATGATGGAC
GACCCAGTCCCGGTCCACACGGGAGATGTGGTCACGGGTTCTGTTGTGTTACAAAGAAATCCGGTATGGA
GAAGGCACATGTCTGTCTCTCTGAGCTGGGTTGTCACGTCCGCACTCGATCCCACGTCTCAAAGAGTTGG
AGAGAAGGTCTTTCCGATCTGGAGGTGA

Translation (475 aa):
MEAPGEGPCSESQVIPVLEEDPVDYGCEMQLLQDGAQLQLQLQPEEFVAIADYTATDETQLSFLRGEKIL
ILRQTTADWWWGERAGCCGYIPANHLGKQLEEYDPEDTWQDEEYFDSYGTLKLHLEMLADQPRTTKYHSV
ILQNKESLKDKVILDVGCGTGIISLFCAHHARPKAVYAVEASDMAQHTSQLVLQNGFADTITVFQQKVED
VVLPEKVDVLVSEWMGTCLLFEFMIESILYARDTWLKGDGIIWPTTAALHLVPCSAEKDYHSKVLFWDNA
YEFNLSALKSLAIKEFFSRPKSNHILKPEDCLSEPCTILQLDMRTVQVPDLETMRGELRFDIQKAGTLHG
FTAWFSVYFQSLEEGQPQQVLSTGPLHPFLGRTGCQCRGPRWSCQMRPVGDRMLLSCSTTHWKQTLFMMD
DPVPVHTGDVVTGSVVLQRNPVWRRHMSVSLSWVVTSALDPTSQRVGEKVFPIWR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH