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Report for CCDS78721.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
78721.1 Public Mus musculus 1 Astn1 23 108 98 CCDS HistoryNCBI Gene:11899Re-query CCDS DB by CCDS ID:78721.1Re-query CCDS DB by GeneID:11899See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 78721.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000046110.15 ENSMUSP00000039711.10 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000046110.15Link to Ensembl Protein Viewer:ENSMUSP00000039711.10Re-query CCDS DB by Nucleotide ID:ENSMUST00000046110Re-query CCDS DB by Protein ID:ENSMUSP00000039711
Original member NCBI NM_007495.4 NP_031521.2 Updated not alive Link to Nucleotide Sequence:NM_007495.4Link to Protein Sequence:NP_031521.2Re-query CCDS DB by Nucleotide ID:NM_007495Re-query CCDS DB by Protein ID:NP_031521
Current member NCBI NM_007495.5 NP_031521.2 Accepted alive Link to Nucleotide Sequence:NM_007495.5Link to Protein Sequence:NP_031521.2Re-query CCDS DB by Nucleotide ID:NM_007495Re-query CCDS DB by Protein ID:NP_031521Link to BLAST:NP_031521.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_031521.2 1294 Q61137-2 1294 100% 0 0

Chromosomal Locations for CCDS 78721.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 158362583 158362865 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 158472375 158472562 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 158502048 158502441 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 158504203 158504349 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 158505362 158505469 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 158509846 158509995 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 158510955 158511122 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 158520444 158520528 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 158572952 158573026 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 158579581 158579718 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 158580211 158580361 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 158597157 158597323 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 158600315 158600509 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 158601937 158602064 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 158609251 158609355 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 158612346 158612534 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 158657040 158657308 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 158663995 158664128 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 158667482 158667633 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 158668628 158668763 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 158674580 158674680 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 158684077 158684260 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 158688513 158688750 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3885 nt):
ATGGCTTTAGCCGGGCTCTGCGCCCTGTTCGCCTGCTGCTGGGGGCCGGCTGCGGTGCTGGCCACAGCTG
CCGGCGACGTGGATCCATCCAAGGAGCTGGAGTGCAAGCTCAAGAGCATCACTGTGTCGGCACTGCCCTT
CCTGCGCGAGAACGACCTGAGCATCATGCACAGTCCCTCGGCCTCCGAACCCAAGCTTCTCTTCTCCGTG
CGCAATGACTTCCCGGGAGAAATGGTCGTGGTGGACGACCTAGAGAACACGGAGCTACCCTATTTCGTGC
TGGAGATCTCAGGGAATACAGAAGACATCCCCCTGGTGCGCTGGAGGCAGCAATGGCTGGAGAATGGCAC
TTTACTCTTTCATATTCACCACCAAGATGGTGCTCCAAGTCTCCCTGGACAAGACCCAACTGAAGAACCC
CAACATGAATCAGCAGAGGAAGAGCTGAGGATCCTGCACATCTCAGTCATGGGTGGCATGATCGCTCTGT
TGCTATCCATCTTGTGCCTGGTGATGATCCTGTACACTCGCAGGCGCTGGTGCAAACGTCGCCGGGTTCC
CCAGCCCCAGAAGAGTGCCAGTGCAGAGGCAGCAAATGAGATTCACTACATCCCATCTGTGCTGATTGGA
GGCCATGGGCGGGAAAGCTTGCGCAATGCCCGTGTGCAGGGCCACAACTCCAGTGGCACTCTGAGCATTC
GGGAGACACCCATCCTGGATGGCTATGAGTATGACATCACAGACCTGCGTCACCACCTGCAAAGGGAGTG
TATGAATGGAGGGGAGGACTTTGCCAGTCAGGTCACACGCACTTTGGACTCCCTACAGGGATGCAATGAG
AAGTCTGGGATGGATCTAACACCAGGGAGTGACAATGCCAAGCTTTCCCTGATGAACAAGTATAAAGACA
ATATCATAGCCACAAGCCCCGTGGATTCTAACCACCAGCAAGCCACTCTGCTCTCCCACACCTCCAGCAG
CCAGAGAAAGAGGATCAACAATAAAGCCAGAGCTGGTTCTGCCTTCTTGAACCCTGAAGGGGACTCCAGC
ACAGAGGCCGAAAATGACCCACAGCTGACCTTCTACACAGACCCCTCTCGGAGCCGGAGGCGCAGTCGAG
TGGGCTCTCCCCGAAGTCCTGTGAATAAGACCACCTTGACCCTGATCAGTGTCACCAGCTGCGTGATTGG
CCTCGTGTGCTCTTCTCATGTCAGCTGCCCTCTTGTTGTCAAGATCACCCTACACGTCCCTGAGCACTTG
ATCGCTGATGGGAGCCGCTTCATCCTGCTGGAGGGGAGCCAGCTGGATGCCAGTGACTGGCTGAACCCTG
CCCAAGTGGTTCTCTTCTCTCAGCAGAACTCCAGCGGGCCCTGGGCCATGGACCTCTGTGCCCGGCGGCT
CCTGGACCCTTGTGAACACCAATGTGACCCCGAAACTGGGGAATGCCTGTGCTATGAAGGCTACATGAAG
GATCCTGTCCACAAGCACCTTTGCATTCGGAATGAATGGGGGACCAACCAGGGGCCTTGGCCTTACACGA
TATTTCAGCGAGGCTTTGACCTGGTTTTGGGAGAGCAACCCTCTGATAAGATATTCAGATTCACCTATAC
CCTCGGGGAAGGCATGTGGTTACCCCTCAGTAAGAGCTTTGTGATTCCACCAGCCGAACTAGCCATCAAT
CCATCAGCAAAGTGTAAGACGGATATGACTGTGATGGAAGATGCTGTAGAGGTCAGAGAGGAGCTGATGA
CATCATCATCCTTTGACAGCCTGGAGGTCCTATTAGACTCCTTTGGGCCAGTGCGTGATTGCAGCAAAGA
TAACGGAGGCTGCAGTAAGAATTTTCGCTGCATTTCAGATCGCAAGTTGGACTCTACTGGTTGTGTGTGT
CCTTCAGGACTCAGCCCTATGAAGGACAGCTCAGGCTGCTATGATCGCCATATCGGAGTGGACTGCTCAG
ATGGTTTCAACGGCGGCTGCGAACAGCTGTGTCTCCAGCAGATGGCGCCGTTCCCAGAGGACCCCACCTT
GTACAACATCCTTATGTTCTGCGGGTGTATCGAAGACTACAAGCTTGGTGTGGATGGACGCTCTTGCCAA
CTTGTCACTGAGACCTGCCCAGAGGGAGGTGACTGTGGGGAAAGCAGAGAGGTTCCCATGAACCAGACTC
TCTTTGGAGAAATGTTCTTTGGCTACAACAACCAGTCCAAGGAAGTAGCCACTGGACAGGTGCTAAAAGG
AACATTCAGACAGAACAACTTTGCTCGTGGTTTAGACCAGCAACTGCCGGATGGTCTTGTGGTTGCCTCT
GTCCCACTGGAGAATCAGTGCCTAGAGGAAATCTCAGAGCCCACCCCAGACCCTGACTTCTTGACTGGGA
TGGTGAACTTCAGTGAAGTGTCTGGATACCCGGTGCTGCAGCACTGGAAGGTTCGGTCTGTGATGTACCA
CATCAAACTCAACCAAGCAGCCATCTCGCAGGCCTTCAGCAATGCTCTTCACTCCTTGGATGGGGCTACA
TCTCGTGCAGATTTTGTGGCTTTGTTGGATCAGTTTGGAAACCATTACATCCAGGAAGCTGTCTACGGCT
TTGAGGAATCCTGTTCTATATGGTACCCAAACAAGCAAGTCCAGCGGAGACTCTGGCTGGAATATGAAGA
CATCAGTAAAGGCAACTCTCCATCTGATGAGTCGGAGGAGCGGGAAAGGGATCCCAAGGTGCTGACATTC
CCAGAATACATCGCTAGCCTGTCAGACTCTGGCACCAAGCGAATGGCAGCTGGAGTCCGGATGGAGTGCC
AGAGCAAGGGACGGTGTCCCTCATCCTGTCCTTTATGTCATGTGACATCCAGCCCTGAAACCCCTGCTGA
GCCAGTTCTACTGGAAGTGACCAGAGCATCCCCCATCTATGAACTGGTGACCAATAACCAGACCCAGAGG
CTCTTACAGGAAGCCACCATGAGCTCTCTCTGGTGTTCAGGGACCGGAGATGTCATTGAGGACTGGTGCC
GATGCGACTCGACTGCTTTTGGAGCAGATGGACTTCCTACCTGTGCACCCCTCCCACAGCCTGTGCTGAG
ACTTTCCACAGTACACGAGCCCAGCAGTAACCTCGTGGTCCTGGAGTGGGAACATTCAGAGCCGCCAATT
GGGGTGCAGATTGTAGACTACCTGATCCGGCAAGAGAAAGTCACTGACCGGATGGACCACTCCAAAGTAG
AGACGGAAACAGTGCTGAGCTTTGTAGACGACATCATCTCTGGAGCAAAGGCTCCATGTGCCATGCCGTC
TCAGGTGCCAGACAAACAGCTCACCACGATTTCTCTCATCATCCGATGCCTGGAACCTGACACCATTTAC
ATGTTCACCCTCTGGGGAGTAGATAACACAGGGCGACGTTCCAGGCCAAGTGATGTGATTGTGAAGACCC
CATGTCCTGTGGTGGATGATGTCAAAGCCCAAGAAATAGCAGACAAGATCTACAATCTCTTCAATGGCTA
CACCAGTGGAAAGGAGCAACAGACTGCCTACAACACCCTTCTGGATCTGGGTTCTCCCACTTTGCACCGA
GTCCTCTACCACTATAACCAGCACTATGAGAGTTTTGGGGAATTCACCTGGCGGTGTGAAGATGAGTTAG
GACCCAGGAAAGCAGGCCTCATCCTTTCCCAGCTTGGAGATCTGAGCAGCTGGTGCAATGGACTCCTTCA
GGAGCCCAAGATAAGCTTGAGGCGTGGTTCACTCAAGTACCTGGGCTGCCGCTACAGTGAGATCAAACCC
TATGGACTGGACTGGTCAGAGCTCAGTCGGGACCTCAGGAAGACATGTGAAGAACAGACCCTGAGTGTCC
CCTACAATGACTACGGGGACAGCAAAGACATCTAG

Translation (1294 aa):
MALAGLCALFACCWGPAAVLATAAGDVDPSKELECKLKSITVSALPFLRENDLSIMHSPSASEPKLLFSV
RNDFPGEMVVVDDLENTELPYFVLEISGNTEDIPLVRWRQQWLENGTLLFHIHHQDGAPSLPGQDPTEEP
QHESAEEELRILHISVMGGMIALLLSILCLVMILYTRRRWCKRRRVPQPQKSASAEAANEIHYIPSVLIG
GHGRESLRNARVQGHNSSGTLSIRETPILDGYEYDITDLRHHLQRECMNGGEDFASQVTRTLDSLQGCNE
KSGMDLTPGSDNAKLSLMNKYKDNIIATSPVDSNHQQATLLSHTSSSQRKRINNKARAGSAFLNPEGDSS
TEAENDPQLTFYTDPSRSRRRSRVGSPRSPVNKTTLTLISVTSCVIGLVCSSHVSCPLVVKITLHVPEHL
IADGSRFILLEGSQLDASDWLNPAQVVLFSQQNSSGPWAMDLCARRLLDPCEHQCDPETGECLCYEGYMK
DPVHKHLCIRNEWGTNQGPWPYTIFQRGFDLVLGEQPSDKIFRFTYTLGEGMWLPLSKSFVIPPAELAIN
PSAKCKTDMTVMEDAVEVREELMTSSSFDSLEVLLDSFGPVRDCSKDNGGCSKNFRCISDRKLDSTGCVC
PSGLSPMKDSSGCYDRHIGVDCSDGFNGGCEQLCLQQMAPFPEDPTLYNILMFCGCIEDYKLGVDGRSCQ
LVTETCPEGGDCGESREVPMNQTLFGEMFFGYNNQSKEVATGQVLKGTFRQNNFARGLDQQLPDGLVVAS
VPLENQCLEEISEPTPDPDFLTGMVNFSEVSGYPVLQHWKVRSVMYHIKLNQAAISQAFSNALHSLDGAT
SRADFVALLDQFGNHYIQEAVYGFEESCSIWYPNKQVQRRLWLEYEDISKGNSPSDESEERERDPKVLTF
PEYIASLSDSGTKRMAAGVRMECQSKGRCPSSCPLCHVTSSPETPAEPVLLEVTRASPIYELVTNNQTQR
LLQEATMSSLWCSGTGDVIEDWCRCDSTAFGADGLPTCAPLPQPVLRLSTVHEPSSNLVVLEWEHSEPPI
GVQIVDYLIRQEKVTDRMDHSKVETETVLSFVDDIISGAKAPCAMPSQVPDKQLTTISLIIRCLEPDTIY
MFTLWGVDNTGRRSRPSDVIVKTPCPVVDDVKAQEIADKIYNLFNGYTSGKEQQTAYNTLLDLGSPTLHR
VLYHYNQHYESFGEFTWRCEDELGPRKAGLILSQLGDLSSWCNGLLQEPKISLRRGSLKYLGCRYSEIKP
YGLDWSELSRDLRKTCEEQTLSVPYNDYGDSKDI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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