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Report for CCDS7858.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
7858.1 Public Homo sapiens 11 GAS2 24 110 108 CCDS HistoryNCBI Gene:2620Re-query CCDS DB by CCDS ID:7858.1Re-query CCDS DB by GeneID:2620See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 7858.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000278187.7 ENSP00000278187.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000278187.7Link to Ensembl Protein Viewer:ENSP00000278187.3Re-query CCDS DB by Nucleotide ID:ENST00000278187Re-query CCDS DB by Protein ID:ENSP00000278187
Original member Current member EBI ENST00000454584.7 ENSP00000401145.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000454584.7Link to Ensembl Protein Viewer:ENSP00000401145.2Re-query CCDS DB by Nucleotide ID:ENST00000454584Re-query CCDS DB by Protein ID:ENSP00000401145
Original member Current member NCBI NM_001143830.3 NP_001137302.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001143830.3Link to Protein Sequence:NP_001137302.1Re-query CCDS DB by Nucleotide ID:NM_001143830Re-query CCDS DB by Protein ID:NP_001137302Link to BLAST:NP_001137302.1
Original member Current member NCBI NM_001391934.1 NP_001378863.1 Accepted alive Link to Nucleotide Sequence:NM_001391934.1Link to Protein Sequence:NP_001378863.1Re-query CCDS DB by Nucleotide ID:NM_001391934Re-query CCDS DB by Protein ID:NP_001378863Link to BLAST:NP_001378863.1
Original member Current member NCBI NM_001391935.1 NP_001378864.1 Accepted alive Link to Nucleotide Sequence:NM_001391935.1Link to Protein Sequence:NP_001378864.1Re-query CCDS DB by Nucleotide ID:NM_001391935Re-query CCDS DB by Protein ID:NP_001378864Link to BLAST:NP_001378864.1
Original member Current member NCBI NM_001391936.1 NP_001378865.1 Accepted alive Link to Nucleotide Sequence:NM_001391936.1Link to Protein Sequence:NP_001378865.1Re-query CCDS DB by Nucleotide ID:NM_001391936Re-query CCDS DB by Protein ID:NP_001378865Link to BLAST:NP_001378865.1
Original member Current member NCBI NM_001391937.1 NP_001378866.1 Accepted alive Link to Nucleotide Sequence:NM_001391937.1Link to Protein Sequence:NP_001378866.1Re-query CCDS DB by Nucleotide ID:NM_001391937Re-query CCDS DB by Protein ID:NP_001378866Link to BLAST:NP_001378866.1
Original member Current member NCBI NM_005256.5 NP_005247.1 Accepted alive Link to Nucleotide Sequence:NM_005256.5Link to Protein Sequence:NP_005247.1Re-query CCDS DB by Nucleotide ID:NM_005256Re-query CCDS DB by Protein ID:NP_005247Link to BLAST:NP_005247.1
Original member Current member NCBI NM_177553.4 NP_808221.1 Accepted alive Link to Nucleotide Sequence:NM_177553.4Link to Protein Sequence:NP_808221.1Re-query CCDS DB by Nucleotide ID:NM_177553Re-query CCDS DB by Protein ID:NP_808221Link to BLAST:NP_808221.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001137302.1 313 O43903-1 313 100% 0 0
NP_001378863.1 313 O43903-1 313 100% 0 0
NP_001378864.1 313 O43903-1 313 100% 0 0
NP_001378865.1 313 O43903-1 313 100% 0 0
NP_001378866.1 313 O43903-1 313 100% 0 0
NP_005247.1 313 O43903-1 313 100% 0 0
NP_808221.1 313 O43903-1 313 100% 0 0

Chromosomal Locations for CCDS 7858.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 22674870 22675014 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 22685668 22685789 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 22726292 22726433 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 22737705 22737768 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 22749120 22749261 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 22755846 22755953 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 22811798 22812016 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (942 nt):
ATGTGCACTGCTCTGAGCCCAAAGGTACGCAGTGGACCTGGCCTCTCTGATATGCATCAGTATAGCCAAT
GGCTAGCCAGCAGACATGAAGCTAATTTGCTACCAATGAAAGAAGATCTGGCCTTGTGGTTAACCAATCT
ATTAGGGAAGGAGATTACAGCAGAAACTTTTATGGAGAAGTTGGACAATGGTGCCTTGCTCTGTCAACTT
GCAGAAACTATGCAGGAGAAATTCAAGGAGAGCATGGATGCTAACAAGCCCACAAAGAATCTACCGTTGA
AGAAGATCCCATGCAAAACCAGTGCACCCTCGGGCTCCTTTTTTGCCAGAGACAATACAGCAAATTTCTT
ATCCTGGTGCCGAGATTTAGGGGTGGATGAAACGTGTCTATTTGAATCGGAAGGTTTGGTCCTCCACAAG
CAACCCAGAGAAGTGTGTCTCTGTCTGCTAGAGCTTGGCCGGATTGCAGCCAGGTATGGTGTGGAGCCTC
CTGGTTTGATAAAGCTGGAAAAAGAGATTGAACAAGAAGAAACACTTTCTGCCCCTTCTCCTTCACCTTC
TCCTTCATCAAAGTCTTCTGGAAAAAAGAGTACAGGAAACTTACTGGATGATGCAGTGAAACGAATTTCT
GAAGATCCTCCTTGCAAATGCCCAAACAAGTTCTGTGTGGAGCGGCTCTCCCAAGGAAGATACCGAGTGG
GAGAAAAGATCCTCTTCATTAGGATGCTGCACAACAAACATGTCATGGTCCGTGTGGGAGGAGGCTGGGA
AACTTTTGCAGGGTATTTGTTGAAACACGACCCCTGCCGAATGCTGCAGATCTCCCGTGTGGATGGCAAA
ACATCCCCTATCCAAAGCAAATCTCCAACTCTAAAGGACATGAATCCAGATAACTACTTGGTGGTCTCTG
CCAGTTATAAGGCTAAGAAGGAAATTAAGTGA

Translation (313 aa):
MCTALSPKVRSGPGLSDMHQYSQWLASRHEANLLPMKEDLALWLTNLLGKEITAETFMEKLDNGALLCQL
AETMQEKFKESMDANKPTKNLPLKKIPCKTSAPSGSFFARDNTANFLSWCRDLGVDETCLFESEGLVLHK
QPREVCLCLLELGRIAARYGVEPPGLIKLEKEIEQEETLSAPSPSPSPSSKSSGKKSTGNLLDDAVKRIS
EDPPCKCPNKFCVERLSQGRYRVGEKILFIRMLHNKHVMVRVGGGWETFAGYLLKHDPCRMLQISRVDGK
TSPIQSKSPTLKDMNPDNYLVVSASYKAKKEIK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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