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Report for CCDS7472.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
7472.1 Public Homo sapiens 10 SFRP5 24 110 108 CCDS HistoryNCBI Gene:6425Re-query CCDS DB by CCDS ID:7472.1Re-query CCDS DB by GeneID:6425See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 7472.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000266066.4 ENSP00000266066.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000266066.4Link to Ensembl Protein Viewer:ENSP00000266066.3Re-query CCDS DB by Nucleotide ID:ENST00000266066Re-query CCDS DB by Protein ID:ENSP00000266066
Original member Current member NCBI NM_003015.3 NP_003006.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_003015.3Link to Protein Sequence:NP_003006.2Re-query CCDS DB by Nucleotide ID:NM_003015Re-query CCDS DB by Protein ID:NP_003006Link to BLAST:NP_003006.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_003006.2 317 Q5T4F7 317 100% 0 0

Chromosomal Locations for CCDS 7472.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 10 (NC_000010.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 97767514 97767860 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 97769668 97769745 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 97771305 97771833 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (954 nt):
ATGCGGGCGGCGGCGGCGGGGGGGGGCGTGCGGACGGCCGCGCTGGCGCTGCTGCTGGGGGCGCTGCACT
GGGCGCCGGCGCGCTGCGAGGAGTACGACTACTATGGCTGGCAGGCCGAGCCGCTGCACGGCCGCTCCTA
CTCCAAGCCGCCGCAGTGCCTTGACATCCCTGCCGACCTGCCGCTCTGCCACACGGTGGGCTACAAGCGC
ATGCGGCTGCCCAACCTGCTGGAGCACGAGAGCCTGGCCGAAGTGAAGCAGCAGGCGAGCAGCTGGCTGC
CGCTGCTGGCCAAGCGCTGCCACTCGGATACGCAGGTCTTCCTGTGCTCGCTCTTTGCGCCCGTCTGTCT
CGACCGGCCCATCTACCCGTGCCGCTCGCTGTGCGAGGCCGTGCGCGCCGGCTGCGCGCCGCTCATGGAG
GCCTACGGCTTCCCCTGGCCTGAGATGCTGCACTGCCACAAGTTCCCCCTGGACAACGACCTCTGCATCG
CCGTGCAGTTCGGGCACCTGCCCGCCACCGCGCCTCCAGTGACCAAGATCTGCGCCCAGTGTGAGATGGA
GCACAGTGCTGACGGCCTCATGGAGCAGATGTGCTCCAGTGACTTTGTGGTCAAAATGCGCATCAAGGAG
ATCAAGATAGAGAATGGGGACCGGAAGCTGATTGGAGCCCAGAAAAAGAAGAAGCTGCTCAAGCCGGGCC
CCCTGAAGCGCAAGGACACCAAGCGGCTGGTGCTGCACATGAAGAATGGCGCGGGCTGCCCCTGCCCACA
GCTGGACAGCCTGGCGGGCAGCTTCCTGGTCATGGGCCGCAAAGTGGATGGACAGCTGCTGCTCATGGCC
GTCTACCGCTGGGACAAGAAGAATAAGGAGATGAAGTTTGCAGTCAAATTCATGTTCTCCTACCCCTGCT
CCCTCTACTACCCTTTCTTCTACGGGGCGGCAGAGCCCCACTGA

Translation (317 aa):
MRAAAAGGGVRTAALALLLGALHWAPARCEEYDYYGWQAEPLHGRSYSKPPQCLDIPADLPLCHTVGYKR
MRLPNLLEHESLAEVKQQASSWLPLLAKRCHSDTQVFLCSLFAPVCLDRPIYPCRSLCEAVRAGCAPLME
AYGFPWPEMLHCHKFPLDNDLCIAVQFGHLPATAPPVTKICAQCEMEHSADGLMEQMCSSDFVVKMRIKE
IKIENGDRKLIGAQKKKKLLKPGPLKRKDTKRLVLHMKNGAGCPCPQLDSLAGSFLVMGRKVDGQLLLMA
VYRWDKKNKEMKFAVKFMFSYPCSLYYPFFYGAAEPH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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