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Report for CCDS7373.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
7373.1 Public Homo sapiens 10 LRIT1 24 110 108 CCDS HistoryNCBI Gene:26103Re-query CCDS DB by CCDS ID:7373.1Re-query CCDS DB by GeneID:26103See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 7373.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000372105.4 ENSP00000361177.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000372105.4Link to Ensembl Protein Viewer:ENSP00000361177.3Re-query CCDS DB by Nucleotide ID:ENST00000372105Re-query CCDS DB by Protein ID:ENSP00000361177
Original member Current member NCBI NM_015613.3 NP_056428.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_015613.3Link to Protein Sequence:NP_056428.1Re-query CCDS DB by Nucleotide ID:NM_015613Re-query CCDS DB by Protein ID:NP_056428Link to BLAST:NP_056428.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_056428.1 623 Q9P2V4 623 100% 0 0

Chromosomal Locations for CCDS 7373.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 10 (NC_000010.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 84231927 84232903 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 84234073 84234378 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 84237220 84237686 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 84241318 84241439 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1872 nt):
ATGAGGGTGGCATTAGGCATGCTCTGGCTCTTGGCCCTTGCGTGGCCCCCCCAGGCCCGGGGCTTCTGCC
CC
TCTCAATGCAGCTGCAGCCTCCATATCATGGGTGATGGCAGCAAGGCCAGGACAGTAGTGTGCAACGA
C
CCCGACATGACCCTGCCCCCGGCGTCCATCCCCCCGGACACCTCCAGACTGCGCCTGGAGCGGACGGCC
ATA
CGCAGGGTTCCTGGCGAGGCCTTCAGGCCCCTGGGCCGCCTGGAGCAGCTGTGGCTGCCTTACAACG
CC
CTCAGCGAGCTCAACGCCCTCATGCTGCGGGGCCTGCGACGCCTGCGGGAGCTGCGGCTGCCCGGGAA
C
CGCCTGGCCGCCTTCCCCTGGGCGGCGCTCAGGGACGCCCCCAAGCTGCGGCTGCTGGACCTGCAGGCC
AAC
CGCCTCTCGGCTGTGCCCGCTGAGGCCGCGCGCTTCCTGGAGAACCTCACCTTCCTCGACCTCTCCA
GC
AACCAGCTGATGAGGCTCCCGCAGGAGCTCATCGTCTCCTGGGCTCACCTGGAGACCGGTATCTTTCC
T
CCCGGCCACCACCCCAGGCGGGTCCTAGGGCTACAGGACAACCCCTGGGCATGTGACTGCCGACTCTAT
GAC
CTGGTTCATCTTTTGGATGGCTGGGCCCCAAACTTGGCCTTCATTGAGACTGAACTGAGATGTGCCA
GC
CCACGTAGCCTGGCCGGAGTGGCCTTCAGCCAGCTTGAACTGAGGAAGTGCCAGGGCCCAGAGCTCCA
T
CCAGGAGTGGCCAGCATCAGGTCCCTTTTGGGTGGCACAGCACTGCTACGCTGTGGAGCTACTGGAGTC
CCT
GGGCCCGAGATGAGCTGGAGGAGGGCCAATGGCAGGCCCCTTAATGGTACAGTGCACCAGGAAGTCT
CC
AGTGACGGCACGAGCTGGACTCTGCTGGGCCTGCCTGCAGTGTCCCACCTTGACTCCGGAGACTACAT
C
TGCCAAGCCAAGAACTTCCTGGGAGCCTCTGAAACTGTTATCTCCTTGATTGTCACTGAGCCACCGACT
TCC
ACAGAACACAGTGGGAGCCCAGGAGCACTATGGGCAAGGACAGGTGGCGGAGGGGAAGCTGCTGCTT
AC
AACAACAAGCTGGTGGCCAGGCATGTCCCCCAGATTCCCAAACCCGCTGTCCTGGCCACTGGACCCTC
T
GTGCCCAGCACAAAGGAGGAGCTGACCCTTGAGCACTTCCAGATGGATGCCCTGGGAGAGCTCTCTGAT
GGG
CGGGCAGGACCCTCAGAGGCACGAATGGTGAGGTCTGTGAAGGTGGTGGGGGACACTTACCACAGCG
TG
TCCTTGGTGTGGAAGGCACCCCAGGCTAAGAACACAACTGCCTTCAGTGTCCTCTACGCGGTCTTTGG
G
CAGCACAGCATGCGGCGGGTGATTGTGCAGCCTGGGAAGACCAGAGTGACCATCACTGGGCTGTTGCCC
AAG
ACCAAGTATGTGGCGTGTGTCTGTGTGCAGGGCCTGGTGCCCCGGAAGGAGCAGTGTGTTATTTTCT
CC
ACCAATGAAGTGGTGGATGCTGAGAACACTCAGCAGCTTATCAATGTGGTGGTGATCAGTGTGGCCAT
C
GTCATTGCCCTGCCTCTCACGCTGCTTGTCTGCTGCAGTGCTCTTCAGAAGCGCTGCCGAAAGTGCTTC
AAC
AAGGACTCCACTGAGGCCACAGTTACCTACGTCAACCTAGAGAGACTGGGCTACAGCGAGGACGGCT
TG
GAGGAGCTGTCCCGGCACAGTGTCAGCGAGGCTGACAGGCTTCTCTCAGCTCGTTCCAGTGTGGACTT
T
CAGGCCTTTGGAGTCAAAGGGGGCAGGAGAATCAATGAGTACTTCTGCTGA


Translation (623 aa):
MRVALGMLWLLALAWPPQARGFCPSQCSCSLHIMGDGSKARTVVCNDPDMTLPPASIPPDTSRLRLERTA
I
RRVPGEAFRPLGRLEQLWLPYNALSELNALMLRGLRRLRELRLPGNRLAAFPWAALRDAPKLRLLDLQA
N
RLSAVPAEAARFLENLTFLDLSSNQLMRLPQELIVSWAHLETGIFPPGHHPRRVL
GLQDNPWACDCRLY
D
LVHLLDGWAPNLAFIETELRCASPRSLAGVAFSQLELRKCQGPELHPGVASIRSLLGGTALLRCGATGV
P
GPEMSWRRANGRPLNGT
VHQEVSSDGTSWTLLGLPAVSHLDSGDYICQAKNFLGASETVISLIVTEPPT
S
TEHSGSPGALWARTGGGGEAAAYNNKLVARHVPQIPKPAVLATGPSVPSTKEELTLEHFQMDALGELSD
G
RAGPSEARMVRSVKVVGDTYHSVSLVWKAPQAKNTTAFSVLYAVFGQHSMRRVIVQPGKTRVTITGLLP
K
TKYVACVCVQGLVPRKEQCVIFSTNEVVDAENTQQLINVVVISVAIVIALPLTLLVCCSALQKRCRKCF
N
KDSTEATVTYVNLERLGYSEDGLEELSRHSVSEADRLLSARSSVDFQAFGVKGGRRINEYFC




Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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