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Report for CCDS73710.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
73710.1 Public Homo sapiens 15 VPS39 24 110 108 CCDS HistoryNCBI Gene:23339Re-query CCDS DB by CCDS ID:73710.1Re-query CCDS DB by GeneID:23339See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 17, NCBI annotation release 106, Ensembl annotation release 76

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 73710.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000348544.4 ENSP00000335193.5 Accepted alive Link to Ensembl Transcript Viewer:ENST00000348544.4Link to Ensembl Protein Viewer:ENSP00000335193.5Re-query CCDS DB by Nucleotide ID:ENST00000348544Re-query CCDS DB by Protein ID:ENSP00000335193
Original member Current member NCBI NM_001301138.3 NP_001288067.1 Accepted alive Link to Nucleotide Sequence:NM_001301138.3Link to Protein Sequence:NP_001288067.1Re-query CCDS DB by Nucleotide ID:NM_001301138Re-query CCDS DB by Protein ID:NP_001288067Link to BLAST:NP_001288067.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001288067.1 886 Q96JC1-1 886 100% 0 0

Chromosomal Locations for CCDS 73710.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 15 (NC_000015.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 42160754 42160829 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 42161682 42161773 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 42162032 42162166 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 42162332 42162481 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 42163350 42163395 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 42163626 42163728 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 42164358 42164486 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 42164996 42165113 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 42165718 42165816 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 42166159 42166232 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 42166563 42166649 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 42166772 42166913 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 42167394 42167537 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 42169724 42169866 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 42173723 42173852 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 42178218 42178338 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 42178450 42178570 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 42184517 42184700 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 42187271 42187363 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 42187758 42187856 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 42189114 42189208 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 42191125 42191167 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 42191496 42191560 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 42192066 42192098 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 42199896 42199961 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 42208081 42208153 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2661 nt):
ATGCACGACGCTTTCGAGCCAGTGCCGATCCTAGAAAAGCTGCCTCTGCAAATCGACTGTCTGGCTGCCT
GGGAGGAATGGCTTCTTGTGGGAACCAAACAAGGACATCTTCTTCTCTATAGGATTCGGAAGGACGTTGT
GCCAGCAGATGTAGCATCACCTGAAAGCGGCAGTTGCAACAGATTTGAAGTGACACTAGAGAAATCCAAT
AAGAACTTCTCCAAAAAGATTCAGCAGATCCATGTGGTTTCCCAGTTTAAGATTCTGGTCAGCTTGTTAG
AAAATAACATTTATGTCCATGACCTATTGACATTTCAACAAATCACTACGGTTTCAAAGGCAAAGGGAGC
ATCACTGTTTACTTGTGACCTCCAGCACACAGAGACCGGTGAGGAGGTGTTACGGATGTGTGTGGCAGTA
AAAAAGAAGCTGCAGCTCTATTTCTGGAAGGACAGGGAATTTCATGAATTGCAGGGGGACTTTAGTGTGC
CAGATGTGCCCAAGTCCATGGCGTGGTGTGAAAATTCTATCTGTGTGGGTTTCAAGAGAGACTACTACCT
AATAAGGGTGGATGGAAAGGGGTCCATCAAAGAGCTCTTTCCAACAGGAAAACAGCTGGAGCCCTTAGTT
GCACCTCTGGCAGATGGAAAAGTGGCTGTGGGCCAGGATGATCTCACCGTGGTACTCAATGAGGAAGGGA
TCTGCACACAGAAATGTGCCCTGAACTGGACGGACATACCAGTGGCCATGGAGCACCAGCCTCCCTACAT
CATTGCAGTGTTGCCTCGATATGTTGAGATCCGAACATTTGAACCGAGGCTTCTGGTCCAAAGCATTGAA
TTGCAAAGGCCCCGTTTCATTACCTCAGGAGGATCAAACATTATCTATGTGGCCAGCAATCATTTTGTTT
GGAGACTCATCCCTGTCCCCATGGCAACCCAAATCCAACAACTTCTCCAGGACAAGCAGTTTGAATTGGC
TCTGCAGCTCGCAGAAATGAAAGATGATTCTGACAGTGAAAAGCAGCAACAAATTCATCACATCAAGAAC
TTGTATGCCTTCAACCTCTTCTGCCAGAAGCGTTTTGATGAGTCCATGCAGGTCTTTGCTAAACTTGGCA
CAGATCCCACCCATGTGATGGGCCTGTACCCTGACCTGCTGCCCACAGACTACAGAAAGCAGTTGCAGTA
TCCCAACCCATTGCCTGTGCTCTCCGGGGCTGAATTGGAGAAGGCTCACTTAGCTCTGATTGACTACCTG
ACACAGAAACGAAGTCAATTGGTAAAGAAGCTGAATGACTCTGATCACCAGTCAAGCACCTCACCGCTCA
TGGAAGGCACTCCCACCATCAAATCCAAGAAGAAGCTGCTACAAATCATCGACACCACCCTGCTCAAGTG
CTATCTCCATACAAATGTGGCCCTGGTGGCCCCCTTGCTACGCCTGGAGAACAATCACTGCCACATCGAG
GAGAGCGAGCACGTGCTAAAGAAGGCTCACAAGTACAGTGAGCTTATCATCCTGTATGAGAAGAAGGGGC
TCCACGAGAAAGCTCTGCAGGTGCTCGTGGACCAGTCCAAGAAAGCCAACTCCCCTCTGAAAGGCCACGA
GAGGACAGTGCAGTATCTGCAGCATCTGGGCACAGAAAACCTGCATTTGATTTTCTCCTACTCAGTGTGG
GTGCTGAGAGACTTCCCAGAAGATGGCCTGAAGATATTTACTGAAGATCTCCCGGAAGTGGAGTCTCTGC
CACGTGATCGAGTCCTCGGCTTCTTAATAGAGAATTTTAAGGGTCTGGCTATTCCTTATCTGGAACACAT
CATCCATGTTTGGGAGGAGACAGGCTCTCGGTTCCACAACTGCCTGATCCAGCTATACTGTGAGAAGGTG
CAAGGTCTGATGAAGGAGTATCTCCTGTCCTTCCCTGCAGGCAAAACCCCAGTCCCAGCTGGAGAGGAAG
AGGGTGAGCTGGGAGAATACCGGCAAAAGCTCCTCATGTTCTTGGAGATTTCCAGCTACTATGATCCAGG
CCGGCTCATCTGTGATTTTCCCTTTGATGGCCTCTTAGAAGAACGAGCTCTCCTGTTGGGGCGCATGGGG
AAACATGAACAAGCTCTTTTCATTTATGTCCACATCTTGAAGGATACAAGGATGGCTGAGGAGTACTGCC
ACAAACACTATGACCGAAACAAAGATGGCAACAAAGATGTGTATCTGTCCCTGCTTCGGATGTACCTGTC
GCCCCCCAGCATTCACTGCCTGGGGCCAATCAAGCTGGAACTACTGGAGCCAAAAGCCAACCTCCAGGCC
GCTCTGCAGGTCCTCGAGCTACACCACAGCAAACTGGACACCACCAAGGCCCTCAACCTTCTGCCAGCAA
ACACTCAGATCAATGACATACGCATCTTCCTGGAAAAGGTCTTGGAAGAAAATGCACAAAAGAAACGGTT
CAATCAAGTGCTCAAGAACCTTCTCCATGCAGAATTCCTGAGGGTCCAGGAAGAGCGGATTTTACACCAG
CAGGTGAAGTGCATCATCACAGAGGAGAAGGTGTGCATGGTGTGTAAGAAGAAGATTGGGAACAGTGCAT
TTGCAAGATACCCCAATGGAGTGGTCGTCCATTACTTCTGTTCCAAAGAGGTAAACCCAGCTGACACTTG
A

Translation (886 aa):
MHDAFEPVPILEKLPLQIDCLAAWEEWLLVGTKQGHLLLYRIRKDVVPADVASPESGSCNRFEVTLEKSN
KNFSKKIQQIHVVSQFKILVSLLENNIYVHDLLTFQQITTVSKAKGASLFTCDLQHTETGEEVLRMCVAV
KKKLQLYFWKDREFHELQGDFSVPDVPKSMAWCENSICVGFKRDYYLIRVDGKGSIKELFPTGKQLEPLV
APLADGKVAVGQDDLTVVLNEEGICTQKCALNWTDIPVAMEHQPPYIIAVLPRYVEIRTFEPRLLVQSIE
LQRPRFITSGGSNIIYVASNHFVWRLIPVPMATQIQQLLQDKQFELALQLAEMKDDSDSEKQQQIHHIKN
LYAFNLFCQKRFDESMQVFAKLGTDPTHVMGLYPDLLPTDYRKQLQYPNPLPVLSGAELEKAHLALIDYL
TQKRSQLVKKLNDSDHQSSTSPLMEGTPTIKSKKKLLQIIDTTLLKCYLHTNVALVAPLLRLENNHCHIE
ESEHVLKKAHKYSELIILYEKKGLHEKALQVLVDQSKKANSPLKGHERTVQYLQHLGTENLHLIFSYSVW
VLRDFPEDGLKIFTEDLPEVESLPRDRVLGFLIENFKGLAIPYLEHIIHVWEETGSRFHNCLIQLYCEKV
QGLMKEYLLSFPAGKTPVPAGEEEGELGEYRQKLLMFLEISSYYDPGRLICDFPFDGLLEERALLLGRMG
KHEQALFIYVHILKDTRMAEEYCHKHYDRNKDGNKDVYLSLLRMYLSPPSIHCLGPIKLELLEPKANLQA
ALQVLELHHSKLDTTKALNLLPANTQINDIRIFLEKVLEENAQKKRFNQVLKNLLHAEFLRVQEERILHQ
QVKCIITEEKVCMVCKKKIGNSAFARYPNGVVVHYFCSKEVNPADT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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