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Report for CCDS73378.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
73378.1 Public Homo sapiens 11 POU2AF3 24 110 108 CCDS HistoryNCBI Gene:120376Re-query CCDS DB by CCDS ID:73378.1Re-query CCDS DB by GeneID:120376See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 17, NCBI annotation release 106, Ensembl annotation release 76

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 73378.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000610738.6 ENSP00000484135.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000610738.6Link to Ensembl Protein Viewer:ENSP00000484135.1Re-query CCDS DB by Nucleotide ID:ENST00000610738Re-query CCDS DB by Protein ID:ENSP00000484135
Original member Current member NCBI NM_001271458.2 NP_001258387.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001271458.2Link to Protein Sequence:NP_001258387.1Re-query CCDS DB by Nucleotide ID:NM_001271458Re-query CCDS DB by Protein ID:NP_001258387Link to BLAST:NP_001258387.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001258387.1 251 A8K830-5 251 100% 0 0

Chromosomal Locations for CCDS 73378.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 111298582 111298588 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 111300527 111300621 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 111304928 111304982 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 111306394 111306623 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 111308069 111308437 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (756 nt):
ATGTCGGAAAAACCGAAGGTGTATCAAGGTGTCCGAGTGAAGATCACAGTGAAGGAGCTGCTGCAGCAAA
GACGGGCACACCAGGCGGCCTCCGGGGGAACCCGGTCCGGAGGCAGCAGTGTCCACCTTTCAGACCCAGT
TGCACCATCTTCTGCAGGACTGTATTTTGAGCCTGAACCAATTTCTTCCACGCCCAATTATTTGCAACGG
GGAGAATTTTCCAGTTGTGTTTCATGTGAAGAAAACTCAAGCTGCCTCGACCAGATCTTTGATTCCTACC
TTCAGACAGAGATGCACCCGGAGCCTTTGCTCAATTCCACACAAAGTGCTCCACACCATTTCCCAGACAG
CTTCCAGGCCACCCCTTTCTGCTTTAACCAGAGCCTGATCCCAGGATCACCTTCAAATTCCTCCATTCTC
TCTGGCTCCTTAGACTACAGTTACTCGCCAGTGCAGCTGCCTTCATATGCTCCAGAGAATTACAATTCCC
CTGCTTCTCTGGACACCAGAACCTGTGGCTACCCCCCAGAAGACCATTCCTACCAACACTTGTCCTCACA
CGCCCAGTACAGCTGCTTCTCCTCGGCCACCACCTCCATCTGCTACTGCGCATCGTGTGAGGCAGAGGAC
TTGGATGCTCTCCAGGCAGCAGAGTACTTCTACCCGAGCACAGACTGTGTGGACTTTGCCCCCTCAGCAG
CCGCCACCAGTGATTTCTATAAGAGGGAAACAAACTGTGACATCTGCTATAGTTAA

Translation (251 aa):
MSEKPKVYQGVRVKITVKELLQQRRAHQAASGGTRSGGSSVHLSDPVAPSSAGLYFEPEPISSTPNYLQR
GEFSSCVSCEENSSCLDQIFDSYLQTEMHPEPLLNSTQSAPHHFPDSFQATPFCFNQSLIPGSPSNSSIL
SGSLDYSYSPVQLPSYAPENYNSPASLDTRTCGYPPEDHSYQHLSSHAQYSCFSSATTSICYCASCEAED
LDALQAAEYFYPSTDCVDFAPSAAATSDFYKRETNCDICYS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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