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Report for CCDS72758.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
72758.1 Public Homo sapiens 1 TRAPPC3 24 110 108 CCDS HistoryNCBI Gene:27095Re-query CCDS DB by CCDS ID:72758.1Re-query CCDS DB by GeneID:27095See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 17, NCBI annotation release 106, Ensembl annotation release 76

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 72758.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000616395.4 ENSP00000480332.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000616395.4Link to Ensembl Protein Viewer:ENSP00000480332.1Re-query CCDS DB by Nucleotide ID:ENST00000616395Re-query CCDS DB by Protein ID:ENSP00000480332
Original member Current member NCBI NM_001270894.2 NP_001257823.1 Accepted alive Link to Nucleotide Sequence:NM_001270894.2Link to Protein Sequence:NP_001257823.1Re-query CCDS DB by Nucleotide ID:NM_001270894Re-query CCDS DB by Protein ID:NP_001257823Link to BLAST:NP_001257823.1

Chromosomal Locations for CCDS 72758.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 36137203 36137322 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 36137796 36137978 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 36139720 36139843 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 36140069 36140166 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 36149337 36149378 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (567 nt):
ATGTCGAGGCAGGCGAACCGTGGCACCGAGAGCAAGAAAATGAGCTCTGAGCTCTTCACCCTGACCTATG
GTGCCCTGGTCACCCAGCTATGTAAGGACTATGAAAATGATGAAGATGTGAATAAACAGCTGGACAAAAT
TCTCTTCTCTAACTTCCTTCCCAGGGGCTTTAACATTGGAGTCCGGCTGATTGAAGATTTCTTGGCTCGG
TCAAATGTTGGGAGGTGCCATGACTTTCGGGAAACTGCGGATGTCATTGCCAAGGTGGCGTTCAAGATGT
ACTTGGGCATCACTCCAAGCATTACTAATTGGAGCCCAGCTGGTGATGAATTCTCCCTCATTTTGGAAAA
TAACCCCTTGGTGGACTTTGTGGAACTTCCTGATAACCACTCATCCCTTATTTATTCCAATCTCTTGTGT
GGGGTGTTGCGGGGAGCTTTGGAGATGGTCCAGATGGCTGTGGAGGCCAAGTTTGTCCAGGACACCCTGA
AAGGAGACGGTGTGACAGAAATCCGGATGAGATTCATCAGGCGGATTGAGGACAATCTTCCAGCTGGAGA
GGAATAA

Translation (188 aa):
MSRQANRGTESKKMSSELFTLTYGALVTQLCKDYENDEDVNKQLDKILFSNFLPRGFNIGVRLIEDFLAR
SNVGRCHDFRETADVIAKVAFKMYLGITPSITNWSPAGDEFSLILENNPLVDFVELPDNHSSLIYSNLLC
GVLRGALEMVQMAVEAKFVQDTLKGDGVTEIRMRFIRRIEDNLPAGEE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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