NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS72727.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
72727.1 Public Homo sapiens 1 HNRNPR 24 110 108 CCDS HistoryNCBI Gene:10236Re-query CCDS DB by CCDS ID:72727.1Re-query CCDS DB by GeneID:10236See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 17, NCBI annotation release 106, Ensembl annotation release 76

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 72727.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000427764.3 ENSP00000392799.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000427764.3Link to Ensembl Protein Viewer:ENSP00000392799.2Re-query CCDS DB by Nucleotide ID:ENST00000427764Re-query CCDS DB by Protein ID:ENSP00000392799
Original member Current member NCBI NM_001297620.2 NP_001284549.1 Accepted alive Link to Nucleotide Sequence:NM_001297620.2Link to Protein Sequence:NP_001284549.1Re-query CCDS DB by Nucleotide ID:NM_001297620Re-query CCDS DB by Protein ID:NP_001284549Link to BLAST:NP_001284549.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001284549.1 595 O43390-3 595 100% 0 0

Chromosomal Locations for CCDS 72727.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 23310454 23311066 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 23311201 23311322 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 23313553 23313702 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 23318483 23318688 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 23321528 23321663 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 23323556 23323732 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 23337754 23337861 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 23338490 23338608 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 23340852 23341008 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1788 nt):
ATGGCTAATCAGGTGAATGGTAATGCGGTACAGTTAAAAGAAGAGGAAGAACCAATGGATACTTCCAGTG
TAACTCACACAGAACACTACAAGACACTGATAGAGGCAGGCCTCCCACAGAAGGTGGCAGAAAGACTTGA
TGAAATATTTCAGACAGGATTGGTAGCTTATGTCGATCTTGATGAAAGAGCAATTGATGCTCTCAGGGAA
TTTAATGAAGAAGGAGCTCTGTCTGTACTACAGCAGTTCAAGGAAAGTGACTTATCACATGTTCAGAACA
AAAGTGCATTTTTATGTGGAGTTATGAAGACCTACAGGCAGAGAGAGAAACAGGGGAGCAAGGTGCAAGA
GTCCACAAAGGGACCTGATGAAGCGAAGATCAAGGTATTTGTAGGCAAAATACCAAGGGATTTATATGAG
GATGAGTTGGTGCCCCTTTTTGAGAAGGCCGGACCCATTTGGGATCTACGTCTTATGATGGATCCACTGT
CCGGTCAGAATAGAGGGTATGCATTTATCACCTTCTGTGGAAAGGAAGCTGCACAGGAAGCCGTGAAACT
GTGTGACAGCTATGAAATTCGCCCTGGTAAACACCTTGGAGTGTGCATTTCTGTGGCAAACAACAGACTT
TTTGTTGGATCCATTCCGAAGAATAAGACTAAAGAAAACATTTTGGAAGAATTCAGTAAAGTCACAGAGG
GTTTGGTGGACGTTATTCTCTATCATCAACCCGATGACAAAAAGAAGAATCGGGGGTTCTGCTTCCTTGA
ATATGAGGATCACAAGTCAGCAGCACAAGCCAGACGCCGGCTGATGAGTGGAAAAGTAAAAGTGTGGGGA
AATGTAGTTACAGTTGAATGGGCTGACCCTGTGGAAGAACCAGATCCAGAAGTCATGGCTAAGGTAAAAG
TTTTGTTTGTGAGAAACTTGGCTACTACGGTGACAGAAGAAATATTGGAAAAGTCATTTTCTGAATTTGG
AAAACTCGAAAGAGTAAAGAAGTTGAAAGATTATGCATTTGTTCATTTTGAAGACAGAGGAGCAGCTGTT
AAGGCTATGGATGAAATGAATGGCAAAGAAATAGAAGGGGAAGAAATTGAAATAGTCTTAGCCAAGCCAC
CAGACAAGAAAAGGAAAGAGCGCCAAGCTGCTAGACAGGCCTCCAGAAGCACTGCGTATGAAGATTATTA
CTACCACCCTCCTCCTCGCATGCCACCTCCAATTAGAGGTCGGGGTCGTGGTGGGGGGAGAGGTGGATAT
GGCTACCCTCCAGATTACTACGGCTATGAAGATTACTATGATGATTACTATGGTTATGATTATCACGACT
ATCGTGGAGGCTATGAAGATCCCTACTACGGCTATGATGATGGCTATGCAGTAAGAGGAAGAGGAGGAGG
AAGGGGAGGGCGAGGTGCTCCACCACCACCAAGGGGGAGGGGAGCACCACCTCCAAGAGGTAGAGCTGGC
TATTCACAGAGGGGGGCACCTTTGGGACCACCAAGAGGCTCTAGGGGTGGCAGAGGGGGTCCTGCTCAAC
AGCAGAGAGGCCGTGGTTCCCGTGGATCTCGGGGCAATCGTGGGGGCAATGTAGGAGGCAAGAGAAAGGC
AGATGGGTACAACCAGCCTGATTCCAAGCGTCGTCAGACCAACAACCAACAGAACTGGGGTTCCCAACCC
ATCGCTCAGCAGCCGCTTCAGCAAGGTGGTGACTATTCTGGTAACTATGGTTACAATAATGACAACCAGG
AATTTTATCAGGATACTTATGGGCAACAGTGGAAGTAG

Translation (595 aa):
MANQVNGNAVQLKEEEEPMDTSSVTHTEHYKTLIEAGLPQKVAERLDEIFQTGLVAYVDLDERAIDALRE
FNEEGALSVLQQFKESDLSHVQNKSAFLCGVMKTYRQREKQGSKVQESTKGPDEAKIKVFVGKIPRDLYE
DELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAVKLCDSYEIRPGKHLGVCISVANNRL
FVGSIPKNKTKENILEEFSKVTEGLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWG
NVVTVEWADPVEEPDPEVMAKVKVLFVRNLATTVTEEILEKSFSEFGKLERVKKLKDYAFVHFEDRGAAV
KAMDEMNGKEIEGEEIEIVLAKPPDKKRKERQAARQASRSTAYEDYYYHPPPRMPPPIRGRGRGGGRGGY
GYPPDYYGYEDYYDDYYGYDYHDYRGGYEDPYYGYDDGYAVRGRGGGRGGRGAPPPPRGRGAPPPRGRAG
YSQRGAPLGPPRGSRGGRGGPAQQQRGRGSRGSRGNRGGNVGGKRKADGYNQPDSKRRQTNNQQNWGSQP
IAQQPLQQGGDYSGNYGYNNDNQEFYQDTYGQQWK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH