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Report for CCDS72443.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
72443.1 Public Mus musculus X Amot 23 108 98 CCDS HistoryNCBI Gene:27494Re-query CCDS DB by CCDS ID:72443.1Re-query CCDS DB by GeneID:27494See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 16, NCBI annotation release 104, Ensembl annotation release 75

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 72443.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000112836.8 ENSMUSP00000108455.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000112836.8Link to Ensembl Protein Viewer:ENSMUSP00000108455.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000112836Re-query CCDS DB by Protein ID:ENSMUSP00000108455
Original member NCBI NM_153319.3 NP_695231.3 Updated not alive Link to Nucleotide Sequence:NM_153319.3Link to Protein Sequence:NP_695231.3Re-query CCDS DB by Nucleotide ID:NM_153319Re-query CCDS DB by Protein ID:NP_695231
Current member NCBI NM_153319.4 NP_695231.3 Accepted alive Link to Nucleotide Sequence:NM_153319.4Link to Protein Sequence:NP_695231.3Re-query CCDS DB by Nucleotide ID:NM_153319Re-query CCDS DB by Protein ID:NP_695231Link to BLAST:NP_695231.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_695231.3 1126 Q8VHG2-1 1126 100% 0 0

Chromosomal Locations for CCDS 72443.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 145450001 145450098 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 145450431 145451303 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 145452395 145452627 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 145453352 145453474 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 145459999 145460189 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 145461736 145461885 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 145471418 145471563 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 145475720 145475812 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 145476195 145476339 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 145480005 145480458 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 145486765 145487639 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3381 nt):
ATGAGAAGTTCTGACGATCAGCCAAGTGGAGGAACGACGGTACTGCAACGGCTGCTTCAAGAGCAGCTTC
GCTATGGCAATCCCAGTGAGAATCGCAGTCTGCTTGCCATACACCAGCAAGCCACAGGGAATAGCTCTCC
ATTTTCCACGGGCAGTGGGAACCAAGGCCCTCAGAATGATGTATTGAGTTCCCAGGATCACCACCAGCAG
CAGCTTGTGGCACACCCTGCTCGCCAAGAGCCCCAGGGTCAGGAAATCCAGTCAGAAAACGGCGTCATGG
AGAAGCAGCTGTCCCCTCGAATGCAGAATAACGAAGAACTCCCAACCTATGAAGAGGCCAAGGTCCAGTC
CCAGTACTTCAGGGGCCAGCAGCATGCTAGTGTTGGGGCTGCTTTCTATGTCACAGGAGTCACCAACCAG
AAGATGAGAACCGAGGGACGCCCGTCAGTCCAGCGCCTCACGCCCGGGAAGATGCACCAAGATGAAGGCC
TTCGAGATCTTAAGCAAGGGCATGTCCGATCCTTGAGTGAAAGACTGATGCAGATGTCATTGGCTACCAG
TGGAGTTAAAGCCCACCCACCTGTTACCAGTGCTCCTCTCTCCCCACCACAACCCAATGATCTCTACAAG
AATGCCACCAGTTCCAGTGAATTCTACAAGGCCCAAGGGCCACCTCCAAGCCAACATAGTCTGAAGGGCA
TGGAACACCGAGGTCCCCCGCCAGAATACCCTTTCAAGGGCGTGCCATCCCAGTCTGTAGTGTGCAAGTC
CCAAGAGCCAGGGCACTTCTATAGTGAGCATCGCCTGAACCAGCCAGGGAGAACAGAGGGGCAACTGATG
AGGTATCAGCACCCCCCTGAGTATGGGGCAGCCAGGGCAACACAGGACATCTCCTCGCTGTCTTTGTCAG
CCAGGAACTCTCAACCTCATAGCCCTACTTCTTCCCTGACAGCTGGGGCTTCCAGCTTGCCCTTGCTGCA
GTCTCCGCCGTCCACTAGATTGCCTCCTGGTCAACACCTGGTCTCGAACCAAGGTGACCACTCTGCTCAC
CTGTCAAGGCATCAGCAGCATCTTCTTTCGAGTCAGAGTCATCAGGGGGACCACTACCGTCACGCCCAGG
CCAGCCTGACTTCAGCGCAGCAGCAGCCAGGAGAAGCCTACTCAGCTATGCCTCGGGCTCAGCAGTCTGC
TTCTTATCAGCCCATGCCAGCTGACCCTTTTGCTATGGTCTCTAGAGCTCAGCAGATGGTTGAGATCCTG
TCTGATGAGAATCGCAACTTGCGGCAGGAGTTGGATGGATGCTATGAGAAGGTGGCGAGACTGCAGAAGG
TGGAGACAGAAATCCAACGGGTCTCAGAGGCTTATGAGAACTTGGTGAAGTCATCTTCCAAAAGAGAGGC
TCTGGAGAAAGCCATGAGGAACAAGCTGGAGGGCGAGATTAGAAGGATGCATGACTTCAACAGAGATCTG
AGAGACCGTCTAGAGACTGCCAACAAGCAGCTGGCAGAGAAGGAGTACGAGGGGTCCGAGGACACCAGGA
AGACCATCTCGCAGCTCTTTGCCAAACATAAAGAAAACCAGCGGGAGAAGGAGAAGCTGGAAGCTGAGCT
GGCTACTGCCCGTTCTACCAATGAAGACCAAAGGCGACACATTGAAATCCGAGACCAGGCATTGAGCAAT
GCCCAGGCGAAGGTGGTGAAGCTGGAAGAAGAGCTGAAAAAGAAGCAAGTGTACGTAGATAAGGTGGAGA
AGATGCAGCAGGCCCTTGTGCAGCTCCAGGCCGCCTGTGAGAAGCGTGAGCAGCTGGAGCACCGGCTCCG
GACACGTTTGGAGAGGGAACTGGAATCCCTTAGAATCCAGCAGCGCCAGGGCAACTCCCAGCCCACTAAT
GCTTCAGAATACAATGCCGCTGCACTGATGGAGCTCCTCCGGGAGAAGGAAGAGAGAATTCTGGCCCTGG
AAGCAGATATGACCAAGTGGGAGCAAAAGTATTTGGAAGAGAATGTGATGAGACACTTTGCTCTGGATGC
TGCTGCAACTGTGGCTGCACAGAGAGACACAACAGTCATTAGCCACTCTCCTAACACCAGCTATGACACA
GCCTTAGAGGCCCGCATCCAGAAGGAAGAGGAAGAAATCCTGATGGCCAACAAGCGTTGCTTGGACATGG
AAGGAAGGATTAAGACCCTCCATGCCCAGATTATTGAAAAGGATGCCATGATCAAGGTGCTGCAGCAGCG
CTCCAGAAAGGAGCCGAGTAAAACAGAGCAACTCTCATCCATGCGGCCAGCAAAGTCTCTGATGTCCATT
TCCAATGCTGGATCAGGCCTCCTTGCACACTCCTCTACCTTGACTGGTGCGCCCATTATGGAGGAGAAGC
GTGATGACAAGAGCTGGAAGGGGAGCCTAGGCGTTCTTCTGGGAGGAGATTACCGTGTTGAGCCGGTCCC
ATCCACACCGTCCCCTGTGCCCCCGTCTACTCCCCTTCTCTCAGCTCATTCGAAGACAGGCAGTCGCGAT
TGCAGCACCCAAACTGAACGTGGACCGGAATCGACCAAAACCGCAGCTGTCACTCCCATCTCGGCTCCAA
TGGCTGGTCCAGTTGCTGCTGCTGCCCCTGCTGCTGCCATCAATGCAACTGCTGCCACCAACACTGCCAC
TGCTGCCACCAACACCACTATCATGGTAGCTGCTGCTCCAGTTGCTGTTGCTGCTGTTGCTGCTCCAGCT
GCTGCTGCCGCCACCCCATCTCCAGCAAACGCTGCTGCTCTTGCCGCTGCTGCCGCTCCAGCTACTTCTG
TCTCTGCAGCTACTTCTGTCTCTGCAGCTAATTCTATCTCTCCAGCTGCTCCTGTCGCTCCAGCTGCTGT
AGTGCCTCCAGCTGCTCCTGTCTCTCCAGCTGCTGCTGTTCAGATTCCAGCTGCTGCATCTCTTACTCCT
GCTACTGTTTCTCCAACTGCTGCCACTGCTACTGCTGCTGTTGCTGCAGCTACTACTGCTGCTATCACTG
CTGCTGCTGCTGCTGCCACTACTGCTATTCAGGTTGCTCCAGCTACTTCGGCTCCGGTTCCATCTCCAGC
TTCGATTCCGGCTCCAGCAACGGCTCAGGCTTCTGCTCCGACTCCGACTCAGGCATCAACTCCAGCTCCG
ACTGAACCTCCTAGTCCAGTTCCAACTCCAACTCCAGCTTTGGTTCAAACTGAGGGTCCTGCAAATCCAG
GTGCCAGTTCCGGACCACGCCGCTTGTCTACACCAAATCTGATGTGCAACCCAGATAAGCCAGATGCCCC
TGCTTTCCACTCCAGCACTCTGGAAAGAAAGACACCCATTCAGATCCTGGGGCAAGAGCCTGATGCAGAG
ATGGTGGAATATCTCATCTAA

Translation (1126 aa):
MRSSDDQPSGGTTVLQRLLQEQLRYGNPSENRSLLAIHQQATGNSSPFSTGSGNQGPQNDVLSSQDHHQQ
QLVAHPARQEPQGQEIQSENGVMEKQLSPRMQNNEELPTYEEAKVQSQYFRGQQHASVGAAFYVTGVTNQ
KMRTEGRPSVQRLTPGKMHQDEGLRDLKQGHVRSLSERLMQMSLATSGVKAHPPVTSAPLSPPQPNDLYK
NATSSSEFYKAQGPPPSQHSLKGMEHRGPPPEYPFKGVPSQSVVCKSQEPGHFYSEHRLNQPGRTEGQLM
RYQHPPEYGAARATQDISSLSLSARNSQPHSPTSSLTAGASSLPLLQSPPSTRLPPGQHLVSNQGDHSAH
LSRHQQHLLSSQSHQGDHYRHAQASLTSAQQQPGEAYSAMPRAQQSASYQPMPADPFAMVSRAQQMVEIL
SDENRNLRQELDGCYEKVARLQKVETEIQRVSEAYENLVKSSSKREALEKAMRNKLEGEIRRMHDFNRDL
RDRLETANKQLAEKEYEGSEDTRKTISQLFAKHKENQREKEKLEAELATARSTNEDQRRHIEIRDQALSN
AQAKVVKLEEELKKKQVYVDKVEKMQQALVQLQAACEKREQLEHRLRTRLERELESLRIQQRQGNSQPTN
ASEYNAAALMELLREKEERILALEADMTKWEQKYLEENVMRHFALDAAATVAAQRDTTVISHSPNTSYDT
ALEARIQKEEEEILMANKRCLDMEGRIKTLHAQIIEKDAMIKVLQQRSRKEPSKTEQLSSMRPAKSLMSI
SNAGSGLLAHSSTLTGAPIMEEKRDDKSWKGSLGVLLGGDYRVEPVPSTPSPVPPSTPLLSAHSKTGSRD
CSTQTERGPESTKTAAVTPISAPMAGPVAAAAPAAAINATAATNTATAATNTTIMVAAAPVAVAAVAAPA
AAAATPSPANAAALAAAAAPATSVSAATSVSAANSISPAAPVAPAAVVPPAAPVSPAAAVQIPAAASLTP
ATVSPTAATATAAVAAATTAAITAAAAAATTAIQVAPATSAPVPSPASIPAPATAQASAPTPTQASTPAP
TEPPSPVPTPTPALVQTEGPANPGASSGPRRLSTPNLMCNPDKPDAPAFHSSTLERKTPIQILGQEPDAE
MVEYLI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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