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Report for CCDS72336.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
72336.1 Public Mus musculus X Otud5 23 108 98 CCDS HistoryNCBI Gene:54644Re-query CCDS DB by CCDS ID:72336.1Re-query CCDS DB by GeneID:54644See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 16, NCBI annotation release 104, Ensembl annotation release 75

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 72336.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000115666.7 ENSMUSP00000111330.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000115666.7Link to Ensembl Protein Viewer:ENSMUSP00000111330.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000115666Re-query CCDS DB by Protein ID:ENSMUSP00000111330
Original member NCBI NM_001290536.1 NP_001277465.1 Updated not alive Link to Nucleotide Sequence:NM_001290536.1Link to Protein Sequence:NP_001277465.1Re-query CCDS DB by Nucleotide ID:NM_001290536Re-query CCDS DB by Protein ID:NP_001277465
Current member NCBI NM_001290536.2 NP_001277465.1 Accepted alive Link to Nucleotide Sequence:NM_001290536.2Link to Protein Sequence:NP_001277465.1Re-query CCDS DB by Nucleotide ID:NM_001290536Re-query CCDS DB by Protein ID:NP_001277465Link to BLAST:NP_001277465.1

Chromosomal Locations for CCDS 72336.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 7842117 7842710 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 7856304 7856397 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 7867515 7867579 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 7867667 7867823 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 7867923 7868071 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 7871996 7872199 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 7873554 7873755 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 7873840 7873953 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 7874230 7874354 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1704 nt):
ATGACTATTCTCCCCAAAAAGAAGCCGCCACCTCCCGACGCCGACCCGGCCAACGAACCGCCGCCGCCCG
GGCCGCTGCCCCCGGCGCCTCGGCGCGGTGCGGGTGTAGGCGTGGGTGGCGGCGGCACGGGTGTGGGCGG
AGGAGAGCGCGACCGTGACTCCGGCGTCGTGGGGGCCCGTCCCCGGGCTTCGCCGCCACCTCAGGGCCCG
CTCCCGGGGCCGCCTGGTGCTCTTCATCGTTGGGCACTGGCCGTGCCGCCTGGCGCAGTCGCGGGCCCTC
GGCCACAGCAGGCTTCTCCACCTCCTTGTGGGGGCCCCGGTGGCCCCGGCGGCGGTCCTGGTGACGCTCT
TGGTGCGACAACTGCGGGGGTGGGCGCGGCAGGGGTGGTGGTGGGCGTGGGTGGTACCGTGGGCGTGGGC
GGCTGCTGCTCGGGGCCCGGGCACAGCAAGCGGCGGCGTCAAGCTCCCGGCGTTGGCGCAGTTGGCGGGG
CCAGTCCGGAACGTGAAGAGGTCGGAGCGGGCTACAACAGTGAAGACGAGTATGAAGCTGCCGCAGCGCG
AATCGAGGCCATGGATCCCGCCACTGTAGAACAGCAGGAACACTGGTTTGAAAAGGCCTTGCGGGACAAG
AAAGGCTTCATCATCAAGCAGATGAAGGAGGACGGTGCCTGTCTATTTCGGGCTGTAGCTGACCAGGTGT
ATGGAGACCAGGACATGCATGAGGTTGTTCGAAAGCATTGCATGGACTATCTGATGAAGAACGCTGATTA
CTTCTCCAACTATGTCACAGAAGACTTCACCACCTATATCAACCGGAAGCGGAAAAACAACTGCCATGGC
AACCACATTGAAATGCAGGCTATGGCAGAGATGTACAACCGTCCTGTGGAGGTGTATCAATATAGCACAG
AACCTATCAACACATTCCATGGGATCCATCAAAATGAAGATGAACCCATCCGTGTCAGCTACCACCGGAA
TATCCACTATAATTCAGTGGTGAATCCTAACAAGGCCACTATTGGTGTGGGGCTGGGCCTACCGTCATTT
AAGCCAGGGTTTGCAGAGCAGTCCCTGATGAAGAATGCCATAAAGACATCAGAAGAGTCATGGATTGAAC
AGCAAATGCTGGAAGACAAGAAACGAGCTACAGACTGGGAGGCCACAAATGAGGCCATAGAGGAGCAGGT
GGCTCGAGAATCTTACCTTCAGTGGCTGAGGGATCAAGAGAAACAGGCCCGCCAGGTCCGGGGACCCAGC
CAGCCCCGGAAAGCCAGTGCCACATGCAGTTCAGCCACAGCAGCAGCCTCCAGTGGCCTGGAGGAATGGA
CTAGTCGGTCCCCACGGCAACGAAGTTCAGCCTCGTCACCTGAGCACCCTGAACTGCATGCCGAGCTAGG
CATTAAGCCCCCTTCCCCAGGCACTGTGTTAGCTCTTGCCAAACCTCCTTCACCCTGTGCACCAGGTACA
AGCAGTCAGTTCTCAGCAGGGGGTGATCGGGCCACCTCTCCTCTTGTGTCCCTCTACCCTGCTCTGGAGT
GCCGGGCCCTCATCCAGCAGATGTCCCCCTCTGCCTTTGCAGGTCTGAATGATTGGGACGATGATGAGAT
CCTAGCATCGGTGCTGGCAGTGTCCCAACAGGAATACCTAGACAGTATGAAGAAAAACAAAGTGCACAGA
GAGCCACCCCCAGACAAGAGTTGA

Translation (567 aa):
MTILPKKKPPPPDADPANEPPPPGPLPPAPRRGAGVGVGGGGTGVGGGERDRDSGVVGARPRASPPPQGP
LPGPPGALHRWALAVPPGAVAGPRPQQASPPPCGGPGGPGGGPGDALGATTAGVGAAGVVVGVGGTVGVG
GCCSGPGHSKRRRQAPGVGAVGGASPEREEVGAGYNSEDEYEAAAARIEAMDPATVEQQEHWFEKALRDK
KGFIIKQMKEDGACLFRAVADQVYGDQDMHEVVRKHCMDYLMKNADYFSNYVTEDFTTYINRKRKNNCHG
NHIEMQAMAEMYNRPVEVYQYSTEPINTFHGIHQNEDEPIRVSYHRNIHYNSVVNPNKATIGVGLGLPSF
KPGFAEQSLMKNAIKTSEESWIEQQMLEDKKRATDWEATNEAIEEQVARESYLQWLRDQEKQARQVRGPS
QPRKASATCSSATAAASSGLEEWTSRSPRQRSSASSPEHPELHAELGIKPPSPGTVLALAKPPSPCAPGT
SSQFSAGGDRATSPLVSLYPALECRALIQQMSPSAFAGLNDWDDDEILASVLAVSQQEYLDSMKKNKVHR
EPPPDKS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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