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Report for CCDS72073.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
72073.1 Public Mus musculus 7 Lsp1 23 108 98 CCDS HistoryNCBI Gene:16985Re-query CCDS DB by CCDS ID:72073.1Re-query CCDS DB by GeneID:16985See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 16, NCBI annotation release 104, Ensembl annotation release 75

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 72073.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000105966.1 ENSMUSP00000101586.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000105966.1Link to Ensembl Protein Viewer:ENSMUSP00000101586.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000105966Re-query CCDS DB by Protein ID:ENSMUSP00000101586
Original member NCBI NM_001271508.1 NP_001258437.1 Updated not alive Link to Nucleotide Sequence:NM_001271508.1Link to Protein Sequence:NP_001258437.1Re-query CCDS DB by Nucleotide ID:NM_001271508Re-query CCDS DB by Protein ID:NP_001258437
Current member NCBI NM_001271508.2 NP_001258437.1 Accepted alive Link to Nucleotide Sequence:NM_001271508.2Link to Protein Sequence:NP_001258437.1Re-query CCDS DB by Nucleotide ID:NM_001271508Re-query CCDS DB by Protein ID:NP_001258437Link to BLAST:NP_001258437.1

Chromosomal Locations for CCDS 72073.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 142472303 142472364 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 142484479 142484625 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 142486347 142486505 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 142488419 142488515 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 142488866 142488940 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 142489129 142489172 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 142489325 142489406 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 142489900 142490034 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 142490345 142490422 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 142490559 142490648 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (969 nt):
ATGAATGGCCCCGCACTCCTGAGGAGAAATGCTAGCAAACGGGGCCTGGAGAAGCTGCTGAGGCTCACAA
CTCAGTGGAGAGAAGAAGACGAGGAAGAGGCTGCCCGTGAGCAGCGTCAACGGGAGCGAGAGAGGCAGCT
ACAGGACCAGGACAAAGATAAAGAAGATGATGGTGGCCATTCCCTGGAACAGCCAGGACAGCAGACACTC
ATCAGCCTGAAGTCCTCTGAACTGGATGAAGATGAGGGTTTTGGTGACTGGTCCCAAAAGCCGGAGCCAC
GGCAGCAATTCTGGGGGAATGAGGGGACTGCAGAAGGGACTGAACCCTCTCAAAGCGAGAGACCAGAGGA
GAAACAAACAGAGGAGAGTTCTCACCAAGCCAAAGTCCACTTGGAGGAGTCAAACCTGAGCTACAGGGAG
CCCGATCCAGAGGATGCTGTTGGGGGTTCTGGGGAGGCGGAAGAGGTCAGGACCCCCAGCCCTTTGGCCT
TAGAAGACACCGTTGAGCTGAGTTCACCTCCCCTGAGCCCTACCACCAAACTGGCTGATAGGACCGAGTC
CCTGAACCGCTCCATTAAAAAGAGCAACAGTGTGAAGAAGTCTCAACCAACCTTGCCCATTTCCACAATT
GATGAACGCCTGCAGCAGTATACCCAGGCCACTGAGTCTTCTGGCCGAACTCCTAAGCTGTCCCGCCAGC
CCTCCATAGAGCTGCCCAGCATGGCCGTAGCCAGTACCAAGACTCTTTGGGAAACAGGAGAAGTGCAGAG
TCAGTCTGCTTCTAAGACACCCTCCTGCCAGGATATAGTAGCTGGAGACATGAGCAAGAAAAGTCTGTGG
GAGCAGAAAGGAGGCTCCAAGATCTCATCCACCATCAAGAGCACCCCATCTGGAAAGCGGTACAAGTTCG
TGGCCACTGGACATGGGAAGTACGAGAAAGTACTTGTGGATGAGGGCTCAGCACCATAG

Translation (322 aa):
MNGPALLRRNASKRGLEKLLRLTTQWREEDEEEAAREQRQRERERQLQDQDKDKEDDGGHSLEQPGQQTL
ISLKSSELDEDEGFGDWSQKPEPRQQFWGNEGTAEGTEPSQSERPEEKQTEESSHQAKVHLEESNLSYRE
PDPEDAVGGSGEAEEVRTPSPLALEDTVELSSPPLSPTTKLADRTESLNRSIKKSNSVKKSQPTLPISTI
DERLQQYTQATESSGRTPKLSRQPSIELPSMAVASTKTLWETGEVQSQSASKTPSCQDIVAGDMSKKSLW
EQKGGSKISSTIKSTPSGKRYKFVATGHGKYEKVLVDEGSAP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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