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Report for CCDS71834.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
71834.1 Public Mus musculus 6 C1rb 23 108 98 CCDS HistoryNCBI Gene:667277Re-query CCDS DB by CCDS ID:71834.1Re-query CCDS DB by GeneID:667277See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 16, NCBI annotation release 104, Ensembl annotation release 75

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 71834.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000184647.1 ENSMUSP00000139376.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000184647.1Link to Ensembl Protein Viewer:ENSMUSP00000139376.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000184647Re-query CCDS DB by Protein ID:ENSMUSP00000139376
Original member Current member NCBI NM_001113356.1 NP_001106827.1 Accepted alive Link to Nucleotide Sequence:NM_001113356.1Link to Protein Sequence:NP_001106827.1Re-query CCDS DB by Nucleotide ID:NM_001113356Re-query CCDS DB by Protein ID:NP_001106827Link to BLAST:NP_001106827.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001106827.1 706 Q8CFG9 706 100% 0 0

Chromosomal Locations for CCDS 71834.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 124570457 124570458 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 124571356 124571581 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 124573213 124573405 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 124574257 124574403 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 124574501 124574697 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 124574906 124575053 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 124575238 124575359 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 124577007 124577085 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 124577376 124577531 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 124579627 124579701 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 124580251 124581026 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2121 nt):
ATGTGGCTCTTTGCCCTCCTGGTGACCCTGTTCTATGGGGTGGAAGGCTCCATCTACCTCCCTCAGAAGC
TCTATGGAGAGGTGACCTCCCCTCTGTATCCCAAGCCTTACCCCAGTGACTTGGAGACAACCACTGTGAT
CACTGTCCCCATGGGGTACAGGGTGAAGCTGGTCTTCTGGCAGTTTGACGTGGAGCCTTCTGAAGGCTGC
CTCTATGACTATGTTAAGATTTCTGCTGATAAGCAAACACTGGGGAGGTTCTGTGGGCAGCTGGATTCTC
CCCTGGGCAACCCCCCAGGAAGCAAGGAATTCATGTCCCAAGGAAACAAGATGCTGCTGACCTTCCACAC
AGACTTCTCCAATGAGGAGAATGGGACCATCATGTTCTACAAGGGCTTCCTGGCCTACTACCAGGCTGTA
GACCTTGATGAATGTGCATCGCAGCCCAACTCAGTGGAAGAGGGTTTGCAGCCCCGATGCCAACATCTGT
GTCACAACTATGTTGGAGGCTACTTCTGTTCCTGCCATCCTGGCTATGAGCTTCAGAAAGATGGGCAATC
CTGCCAGGCTGAGTGCAGCAGTGAGCTCTACACAGAGCCCTCAGGCTATGTCTCCAGCCTTGAATACCCT
CAGCCCTATCCACCGGATCTACGCTGCAACTACAGCATCCGGGTGGAGAGGGGCCTCACTGTGCACCTCA
AGTTCCTGGATCCTTTTGAAATTGATGACCACCAGCAAGTGCACTGCCCCTATGACCAGCTCCAGATCTA
CGCTAATGGGAAGAACTTGGGTGAATTCTGTGGAAAGCAAAGGCCTCCAGACCTTGACACCAGCAGCAAT
GCAGTGGATCTGCTGTTCTTCACAGATGAGTCAGGGGACAGCCGAGGCTGGAAGCTGCACTACACCACTG
AAACCATCAAGTGCCCCCAGCCCAAGGCTCTGGATGAGTTCACCATCATCCAGGATCCACAGCCTCAGTA
CCAGTTCCGGGATTACTTCACTGTCACCTGCAAGCAAGGCTACCAGCTCATGGAGGGAAATCAGGCGCTA
CTGTCCTTCACAGCTGTTTGCCAGCATGATGGCACGTGGCATCGTGCCATGCCCAGGTGCAAGATCAAGA
ACTGTGGGCAGCCCCAAAGCCTGTCTAATGGGGACTTCCGCTACATCACCACAAAAGGTGTGACCACCTA
TGAAGCCAGTATCCAGTATCACTGCCATGAACCATATTACAAGATGCTGACCAGAGCTGGCAGCAGCGAG
TCCATGCGAGGGATATATACCTGCACAGCCCAAGGCATTTGGAAGAATGAAGAGGAAGGAGAGAAAATGC
CCCGGTGTCTGCCAGTGTGTGGGAAACCTGTCAACCCTGTGACACAGAAGGAGCGCATCATTGGAGGGCA
GCCAGCCAGGCCCGGCAACTTCCCCTGGCAGGCCTTCACCACTATCTATGGGCCAGGGGGTGGGGCCCTG
CTTGGAGACCGCTGGATCCTCACAGCAGCCCACACCATCTACCCCAAGTATCCCAACAAAGGAAAAAACA
CCAACCCCAGAACGCTTGTTTTCCTGGGCCACACAAACATGGAACAGATCCAAAAACTGGGACATCACCC
AGTCCGTAGGGTCATCATACACCCAGACTACCGCCAAGAAGAACCTGACAATTTTGAAGGAGACATTGCT
CTACTGGAGCTGGAAAACAGTGTCACACTGGGCCCCGAACTCCTCCCCATCTGTCTCCCAGACAATGAGA
CCTTCTATGGCCAAGGCCTCATGGGTTATGTCAGCGGATTCGGGACAACAGGAAATAGGATACCTTTCCA
TCTCAGGTTTGTCAGACTGCCTGTAGCTGATCGAGAGGCATGCCAGAGATGGCTCTGGACAAAAAAGGAT
ACTTCTCCATTTTCTCAAAATATGTTCTGTTCTGGGGACCCAGCTGTACAGCAAGACGCCTGCCAGGGGG
ACAGTGGGGGTGTTTTTGCAGTCAGGGACAGAAATCGTGATATCTGGGTGGCTACGGGCATCGTATCCTG
GGGCATTGGGTGTGGTGAGGGATATGGCTTCTACACCAAGGTACTGAATTATGTTGACTGGATCAAGAAA
GAGATGGGAGACGAAAACTGA

Translation (706 aa):
MWLFALLVTLFYGVEGSIYLPQKLYGEVTSPLYPKPYPSDLETTTVITVPMGYRVKLVFWQFDVEPSEGC
LYDYVKISADKQTLGRFCGQLDSPLGNPPGSKEFMSQGNKMLLTFHTDFSNEENGTIMFYKGFLAYYQAV
DLDECASQPNSVEEGLQPRCQHLCHNYVGGYFCSCHPGYELQKDGQSCQAECSSELYTEPSGYVSSLEYP
QPYPPDLRCNYSIRVERGLTVHLKFLDPFEIDDHQQVHCPYDQLQIYANGKNLGEFCGKQRPPDLDTSSN
AVDLLFFTDESGDSRGWKLHYTTETIKCPQPKALDEFTIIQDPQPQYQFRDYFTVTCKQGYQLMEGNQAL
LSFTAVCQHDGTWHRAMPRCKIKNCGQPQSLSNGDFRYITTKGVTTYEASIQYHCHEPYYKMLTRAGSSE
SMRGIYTCTAQGIWKNEEEGEKMPRCLPVCGKPVNPVTQKERIIGGQPARPGNFPWQAFTTIYGPGGGAL
LGDRWILTAAHTIYPKYPNKGKNTNPRTLVFLGHTNMEQIQKLGHHPVRRVIIHPDYRQEEPDNFEGDIA
LLELENSVTLGPELLPICLPDNETFYGQGLMGYVSGFGTTGNRIPFHLRFVRLPVADREACQRWLWTKKD
TSPFSQNMFCSGDPAVQQDACQGDSGGVFAVRDRNRDIWVATGIVSWGIGCGEGYGFYTKVLNYVDWIKK
EMGDEN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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