NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS71790.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
71790.1 Public Mus musculus 6 Arhgap25 23 108 98 CCDS HistoryNCBI Gene:232201Re-query CCDS DB by CCDS ID:71790.1Re-query CCDS DB by GeneID:232201See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 16, NCBI annotation release 104, Ensembl annotation release 75

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 71790.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000071024.6 ENSMUSP00000068964.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000071024.6Link to Ensembl Protein Viewer:ENSMUSP00000068964.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000071024Re-query CCDS DB by Protein ID:ENSMUSP00000068964
Original member Current member NCBI NM_001286610.1 NP_001273539.1 Accepted alive Link to Nucleotide Sequence:NM_001286610.1Link to Protein Sequence:NP_001273539.1Re-query CCDS DB by Nucleotide ID:NM_001286610Re-query CCDS DB by Protein ID:NP_001273539Link to BLAST:NP_001273539.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001273539.1 559 Q8BYW1-2 559 100% 0 0

Chromosomal Locations for CCDS 71790.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 87459920 87460133 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 87462931 87463463 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 87465501 87465697 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 87466473 87466594 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 87467913 87467986 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 87470513 87470645 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 87476143 87476350 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 87488192 87488308 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 87492178 87492259 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1680 nt):
ATGTATCTGCCAGGCAGTACAGTCAAAGAAATTGCCACAAACCCCGAAGAAGCTGGGAAATTTGTCTTTG
AAGTTATTCCAGCCTCAAGTGACCAGAACCGCATTGGACAAGACTCCTACGTCCTCATGGCCAGCTCCCA
GGTAGAGATGGAGGAGTGGGTTAAGTTCCTCAGGAGAGTTGCTGGCACGCCCTCTGGAGCGGTGTTTGGC
CAGCGTCTGGATGAGACTGTGGCCTATGAGCAGAAGTTTGGCCCTCACCTGGTGCCCATCTTGGTGGAGA
AGTGCGCTGAGTTCATCCTGGAACATGGTGTGAGTGAAGAGGGCATCTTCCGCCTGCCCGGGCAGGACAA
CCTTGTGAAGCAGCTGAGAGATGCTTTCGATGCGGGGGAGCGGCCCTCCTTTGACAGGGACACAGATGTG
CACACGGTGGCATCTCTACTAAAGCTCTACCTCCGAGACCTGCCAGAGCCTGTGGTTCCTTGGAGTCAGT
ATGAAGGGTTCCTGCTCTGTGGGCAGCTCATGAACGCAGATGAGGCAAAGGCTCAGCAGGAGTTGGTGAA
GCAGCTTTCTACCCTTCCCCGAGACAACTACAACCTCCTGAGCTACATCTGCAGATTTCTGCATGAAATC
CAGCTGAACTGTGCCGTCAACAAGATGAGCGTGGACAACCTGGCCACTGTGATCGGGGTGAACCTCATCA
GGTCGAAGGTTGAAGACCCAGCTGTGATTATGAGAGGGACTCCTCAGATCCAAAGAGTGATGACCATGAT
GATCAGAGACCACGAAGTCCTCTTCCCCAAGTCTAAGGATGCACCGATCTCACCCCCTGCCCAGAAAAAC
GATGCCAAGAAGGCTCCAGTGCCGCGAAGCTCTGTGGGGTGGGATGCCACGGAAGACCCACCCCTTTCTA
GGACAGACAGCTTCAGTAACACAGCAAGTAGTCCTGATGCCACCAGTCCCACTGGACCACTGCCCAGTGA
CCAGCATCAGGAAGACAGCGGAAAAGCCCCCAGGGAAAACCCAGGAGACTGGAAGATGCAATCCCGTAAA
AGGACTCAAACGCTTCCCAACCGGAAGTGTTTCCTGACGTCCGCATTCCAAGGCACCACCAGCAGTAAAC
TGGAAATCTTTAAAAATGAGTTCTGGTCTCCATCTTCAGAGGCTAAGGCAGGAGAAGGGCACAGGCGAAC
TATGTCCCAAGACTTGCGCCACCTTTCCAATGACCAGCGGACTTCTACCTACGATAATGTCCCCACCTCA
CCACAGTCCCAAGGGAACCCAGCAGGTGCACTCTCTCCCCCTGCCAGTGACTCCAAGAGAGATGCTCTTG
TTAGCACAGACTCTGAAATGGAGGCTGGAAGCAAGAACTCTGGCGAGGATGACCTTGATTCTCTGCAGAG
GACAGTCCAGAGCCTACAGAAGGAAATAGAAACCCAGAAGCAGGTCTATGAGGAACAGATTAAAAACCTG
GAGAAGGAAAATTACGATGTCTGGGCTAAGGTGGTGAGGCTCAATGAAGAACTCGAGAGGGAGAGGAAGA
AATTCGCGGCCCTGGAAATCAGCCTTCGAAATGTGGAGCGCTCCCGGGAGGACGTTGAGAAGAGGAACAG
AGTCTTGGAAGAAGAAGTCAAGGAGTTTGTGAAGTCGATGGAGAAGCCCAAGACAAAGACGGATCCTTGA

Translation (559 aa):
MYLPGSTVKEIATNPEEAGKFVFEVIPASSDQNRIGQDSYVLMASSQVEMEEWVKFLRRVAGTPSGAVFG
QRLDETVAYEQKFGPHLVPILVEKCAEFILEHGVSEEGIFRLPGQDNLVKQLRDAFDAGERPSFDRDTDV
HTVASLLKLYLRDLPEPVVPWSQYEGFLLCGQLMNADEAKAQQELVKQLSTLPRDNYNLLSYICRFLHEI
QLNCAVNKMSVDNLATVIGVNLIRSKVEDPAVIMRGTPQIQRVMTMMIRDHEVLFPKSKDAPISPPAQKN
DAKKAPVPRSSVGWDATEDPPLSRTDSFSNTASSPDATSPTGPLPSDQHQEDSGKAPRENPGDWKMQSRK
RTQTLPNRKCFLTSAFQGTTSSKLEIFKNEFWSPSSEAKAGEGHRRTMSQDLRHLSNDQRTSTYDNVPTS
PQSQGNPAGALSPPASDSKRDALVSTDSEMEAGSKNSGEDDLDSLQRTVQSLQKEIETQKQVYEEQIKNL
EKENYDVWAKVVRLNEELERERKKFAALEISLRNVERSREDVEKRNRVLEEEVKEFVKSMEKPKTKTDP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH