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Report for CCDS71338.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
71338.1 Public Mus musculus 3 Zzz3 23 108 98 CCDS HistoryNCBI Gene:108946Re-query CCDS DB by CCDS ID:71338.1Re-query CCDS DB by GeneID:108946See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 16, NCBI annotation release 104, Ensembl annotation release 75

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 71338.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000089982.10 ENSMUSP00000087428.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000089982.10Link to Ensembl Protein Viewer:ENSMUSP00000087428.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000089982Re-query CCDS DB by Protein ID:ENSMUSP00000087428
Original member Current member NCBI NM_001287139.1 NP_001274068.1 Accepted alive Link to Nucleotide Sequence:NM_001287139.1Link to Protein Sequence:NP_001274068.1Re-query CCDS DB by Nucleotide ID:NM_001287139Re-query CCDS DB by Protein ID:NP_001274068Link to BLAST:NP_001274068.1

Chromosomal Locations for CCDS 71338.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 152427307 152428832 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 152446799 152446937 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 152448779 152448926 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 152449016 152449128 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 152449645 152449716 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 152450610 152450711 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 152451303 152451398 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 152451991 152452143 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 152455820 152455954 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 152457869 152457969 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 152458254 152458398 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2730 nt):
ATGGTAGGGACTTGCCATAGTATGGCTGCTTCCCGATCTACTCGTGTTACAAGATCAACAGTGGGGTTAA
ACGGCTTGGATGAATCTTTTTGTGGTAGAACTTTAAGGAATCGTAGCATTGCTCACCCAGAAGAAATCTC
TTCTCATTCTCAAGTACGATCAAGATCACCAAAGAAGAGAGCAGAGCCTGTGCCAACTCAGAAAGGAACC
AATAATGGAAGAACCTCTGATGTGAGACAGCAGAGCGCTCGAGACTCATGGGTGAGCCCTAGGAAAAGAA
GACTTTCTTCTTCGGAAAAGGATGACCTGGAAAGGCAGGCCCTAGAGAGTTGTGAGAGGAGGCAGGCAGA
GCCAGCACCACCAGTCTTTAAGAACATTAAACGCTGTCTTAGAGCTGAAGCCACAAATAGTTCAGAAGAA
GATTCGCCTGTAAAACCAGACAAGGAGCCAGGAGAACACAGGAGGATAGTAGTGGACCATGATGCAGACT
TTCAAGGGGCTAAACGAGCTTGTCGATGTCTTATATTGGATGATTGTGAGAAAAGGGAAGTTAAAAAGGT
GAATGTCAGTGAGGAAGGGCCACTTAATGCTGCAGTAGTAGAAGAAATCACAGGCTATTTGACTGTCAAT
GGTGTTGATGACAGTGACTCAGCTGTTATAAACTGTGATGACTGTCAGCCTGACGGGAACACTAAACAAA
ATAACCCTGGTTCCTGTGTGCTGCAGGAAGAATCAGTAGCTGGAGATGGGGATTCGGAAACCCAGACCTC
AGTGTTCTGTGGTAGTAGGAAGGAGGACAGTTGTATAGACCATTTCGTGCCTTGCACAAAGTCTGATGTG
CAGGTCAAGTTGGAGGACCACAAACTAGTAACTGCCTGCCTACCTGTGGAACGACGAAATCAGCTGACTG
CCGAGTCAGCTTCAGGCCCTGTTTCTGAAATTCAGTCATCCTTAAGAGATTCTGAGGAAGAAGTAGATGT
GGTGGGAGATAGCAGTGCCTCCAAAGAGCAGTGTAATGAGAACAGCAGTAACCCCCTGGACACGGGTTCT
GAACGCATGCCAGTCTCTGGAGAGCCAGAGCTGTCCTCTATCCTAGACTGTGTTTCAGCTCAGATGACAT
CTTTATCAGAACCTCAGGAACATCGGTACACCCTGAGAACTTCACCTCGGAGGGCGGCCCTGGCCAGAAG
TAGTCCTACTAAAACCACATCTCCTTACAGAGAAAATGGACAGTTGGAGGAGACTAATCTCAGTCCCCAG
GAAACAAACACGACCGTTAGTGATCATGTGAGTGAGTCTCCCACAGATCCTGCCGAAGTTCCTCAAGATG
GAAAGGTTCTATGTTGTGACTCTGAAAACTATGGAAGTGAAGGACTAAGTAAGCCACCCTCAGAGGCCAG
AGTGAATATTGGACATTTGCCATCTGCCAAAGAGAGTGCCAGTCAGCACACTGCCGAGGAGGAAGATGAT
GACCCTGATGTTTATTACTTTGAATCAGATCATGTGGCACTGAAACACAACAAAGATTATCAGAGACTGC
TACAGACCATTGCTGTACTTGAGGCTCAGCGTTCCCAAGCAGTGCAAGACCTGGAAAGTTTAGGCAAACA
CCAGAGAGAAGCACTAAAAAATCCTATTGGATTTGTGGAGAAACTTCAGAAGAAGGCTGACATAGGGCTT
CCATACCCACAGAGAGTTGTTCAGTTACCTGAGATCATGTGGGACCAGTACACCAATAGCCTTGGGAACT
TTGAAAGAGAATTTAAACACCGCAAAAGACATACTAGGAGAGTTAAGTTAGTTTTTGATAAAGGGTTGCC
CGCTAGACCAAAAAGTCCTTTAGATCCTAAGAAGGATGGAGAATCCCTTTCGTACTCCATGTTGCCTTTG
AGTGATGGTCCAGAAGGCTCCCATAACCGTCCTCAGATGATAAGAGGTCGCCTGTGTGACGACAGCAAGC
CCGAGACCTTCAACCAGCTGTGGACTGTTGAAGAACAGAAAAAACTCGAACAGCTACTCCTGAAATACCC
TCCCGAAGAAGTAGAATCTCGGCGGTGGCAGAAGATTGCTGATGAACTGGGCAACCGGACAGCCAAACAG
GTCGCCAGTCGTGTACAGAAGTACTTCATAAAGCTAACGAAAGCCGGCATACCAGTTCCAGGCAGAACAC
CTAACTTATATATATACTCCAGAAAGTCCTCAACAAGCAGGCGACAGCACCCCCTTAATAAGCACCTCTT
TAAACCTTCCACTTTCATGACTTCACATGAGCCACCGGTGTACATGGATGAAGATGATGACCGGTCCTGT
CTCCATAGCCACATGAGCACTGCTGCTGAGGAGGCCTCAGATGAAGAAAGCATTCCTATCATATATAGGA
GTTTACCTGAATATAAAGAACTATTACAGTTTAAAAAGTTAAAAAAGCAGAAACTTCAACAAATGCAAGC
AGAAAGTGGGTTTGTGCAGCACGTAGGCTTTAAGTGTGATAACTGTGGTGTGGAACCTATCCAAGGAGTC
CGGTGGCACTGCCAGGACTGCCCTCCAGAAATGTCTTTGGATTTCTGTGACTCTTGTTCAGACTGCCCAC
ATGAAACAGATATTCACAAGGAAGACCACCAGTTAGAACCTGTTTATAAGTCAGAGACGTTCTTAGACAG
AGATTACTGTGTGTCCCAGGGCACCAGTTATAGTTATCTGGACCCCAACTACTTCCCAGCCAACAGATGA

Translation (909 aa):
MVGTCHSMAASRSTRVTRSTVGLNGLDESFCGRTLRNRSIAHPEEISSHSQVRSRSPKKRAEPVPTQKGT
NNGRTSDVRQQSARDSWVSPRKRRLSSSEKDDLERQALESCERRQAEPAPPVFKNIKRCLRAEATNSSEE
DSPVKPDKEPGEHRRIVVDHDADFQGAKRACRCLILDDCEKREVKKVNVSEEGPLNAAVVEEITGYLTVN
GVDDSDSAVINCDDCQPDGNTKQNNPGSCVLQEESVAGDGDSETQTSVFCGSRKEDSCIDHFVPCTKSDV
QVKLEDHKLVTACLPVERRNQLTAESASGPVSEIQSSLRDSEEEVDVVGDSSASKEQCNENSSNPLDTGS
ERMPVSGEPELSSILDCVSAQMTSLSEPQEHRYTLRTSPRRAALARSSPTKTTSPYRENGQLEETNLSPQ
ETNTTVSDHVSESPTDPAEVPQDGKVLCCDSENYGSEGLSKPPSEARVNIGHLPSAKESASQHTAEEEDD
DPDVYYFESDHVALKHNKDYQRLLQTIAVLEAQRSQAVQDLESLGKHQREALKNPIGFVEKLQKKADIGL
PYPQRVVQLPEIMWDQYTNSLGNFEREFKHRKRHTRRVKLVFDKGLPARPKSPLDPKKDGESLSYSMLPL
SDGPEGSHNRPQMIRGRLCDDSKPETFNQLWTVEEQKKLEQLLLKYPPEEVESRRWQKIADELGNRTAKQ
VASRVQKYFIKLTKAGIPVPGRTPNLYIYSRKSSTSRRQHPLNKHLFKPSTFMTSHEPPVYMDEDDDRSC
LHSHMSTAAEEASDEESIPIIYRSLPEYKELLQFKKLKKQKLQQMQAESGFVQHVGFKCDNCGVEPIQGV
RWHCQDCPPEMSLDFCDSCSDCPHETDIHKEDHQLEPVYKSETFLDRDYCVSQGTSYSYLDPNYFPANR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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