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Report for CCDS71167.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
71167.1 Public Mus musculus 2 Gss 23 108 98 CCDS HistoryNCBI Gene:14854Re-query CCDS DB by CCDS ID:71167.1Re-query CCDS DB by GeneID:14854See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 16, NCBI annotation release 104, Ensembl annotation release 75

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 71167.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000130881.7 ENSMUSP00000135319.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000130881.7Link to Ensembl Protein Viewer:ENSMUSP00000135319.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000130881Re-query CCDS DB by Protein ID:ENSMUSP00000135319
Original member Current member NCBI NM_001291111.1 NP_001278040.1 Accepted alive Link to Nucleotide Sequence:NM_001291111.1Link to Protein Sequence:NP_001278040.1Re-query CCDS DB by Nucleotide ID:NM_001291111Re-query CCDS DB by Protein ID:NP_001278040Link to BLAST:NP_001278040.1

Chromosomal Locations for CCDS 71167.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 155563596 155563719 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 155564760 155564949 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 155566803 155566884 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 155567693 155567887 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 155571519 155571585 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 155572924 155573001 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 155573095 155573175 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 155577522 155577638 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 155578289 155578428 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 155578712 155578787 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 155581888 155581955 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1218 nt):
ATGGACTTCAACATACTGGTGGATGCTGTCAGCCAGAACCCAGCCTTCCTGGAGCAAACACTGTCTAGCA
CCATCAAAAAGGACGACTATACTGCCCGTCTCTTTGATATCTACAAGCAAGTCCTGAAAGAGGGCATTGC
CCAGACCGTGTTCCTGGGCCTGAATCGCTCAGATTACATGTTCCAGTGCGGCGCAGACGGCTCCAAAGCC
CTGAAACAGATCGAGATCAACACTATCTCTGCCAGCTTTGGGGGCCTGGCCTCCCGGACTCCAGCTGTGC
ACCGACACGTTCTCAATGTCCTGAATAAGACCAAAGAAGCTTCCAAGATCCTGTCCAATAACCCCAGCAA
GGGACTGGCCCTGGGGATCGCCAAAGCCTGGGAGCTCTATGGCTCAGCTAATGCGGTGGTGCTACTGATT
GCTCAAGAGAAGGAAAGGAACATATTTGACCAGCGTGCCGTAGAGAACGAGCTGCTAGACAGGAAGATCC
ATGTCATCCGTGGAAGATTTGAAGATGTCTCTGAAAGGGGTTCTCTGGACCAAAACCGAAGGCTGTTTAT
GGATGACCAGGAAGTTGCTGTGGTGTACTTCCGAGATGGCTACATGCCCAGTCAGTATAATTCACAGAAC
TGGGAAGCACGCCTGATGCTAGAGAGATCTCGTGCTGCCAAGTGTCCAGACATTGCCATACAGCTGGCTG
GGACTAAGAAGGTGCAGCAGGAACTGAGCAGGGTGGGTCTGCTGGAAGCGCTGCTCCCGGGCCAGCCTGA
GGCTGTGGCCCGCCTCCGAGCCACCTTTGCTGGCCTCTATTCACTGGACATGGGTGAAGAAGGGGACCAG
GCCATTGCTGAGGCCCTTGCTGCTCCTAGCCACTTTGTGCTGAAGCCCCAGAGAGAGGGTGGAGGTAACA
ACTTATACGGGGAGGAAATGGTACAAGCTCTGGAGCAGCTGAAGGACAGTGAGGAGAGAGCCTCCTACAT
CCTCATGGAGAAGATTGAACCTGAGCCTTTTAGGAATTGCTTGCTACGGCCTGGCAGCCCTGCCCAAGTG
GTCCAGTGTATCTCGGAGCTGGGTATTTTTGGAGTCTATGTCAGACAGGGAACAACACTGGTGATGAACA
AGCATGTGGGGCACCTGCTTCGAACCAAAGCCGTGGAGCATGCAGACGGAGGTGTGGCGGCAGGAGTGGC
AGTCCTGGACAACCCCTACCCTGTGTGA

Translation (405 aa):
MDFNILVDAVSQNPAFLEQTLSSTIKKDDYTARLFDIYKQVLKEGIAQTVFLGLNRSDYMFQCGADGSKA
LKQIEINTISASFGGLASRTPAVHRHVLNVLNKTKEASKILSNNPSKGLALGIAKAWELYGSANAVVLLI
AQEKERNIFDQRAVENELLDRKIHVIRGRFEDVSERGSLDQNRRLFMDDQEVAVVYFRDGYMPSQYNSQN
WEARLMLERSRAAKCPDIAIQLAGTKKVQQELSRVGLLEALLPGQPEAVARLRATFAGLYSLDMGEEGDQ
AIAEALAAPSHFVLKPQREGGGNNLYGEEMVQALEQLKDSEERASYILMEKIEPEPFRNCLLRPGSPAQV
VQCISELGIFGVYVRQGTTLVMNKHVGHLLRTKAVEHADGGVAAGVAVLDNPYPV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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