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Report for CCDS71095.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
71095.1 Public Mus musculus 2 Slc39a13 23 108 98 CCDS HistoryNCBI Gene:68427Re-query CCDS DB by CCDS ID:71095.1Re-query CCDS DB by GeneID:68427See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 16, NCBI annotation release 104, Ensembl annotation release 75

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 71095.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000111436.2 ENSMUSP00000107063.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000111436.2Link to Ensembl Protein Viewer:ENSMUSP00000107063.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000111436Re-query CCDS DB by Protein ID:ENSMUSP00000107063
Original member NCBI NM_001290765.1 NP_001277694.1 Updated not alive Link to Nucleotide Sequence:NM_001290765.1Link to Protein Sequence:NP_001277694.1Re-query CCDS DB by Nucleotide ID:NM_001290765Re-query CCDS DB by Protein ID:NP_001277694
Current member NCBI NM_001290765.2 NP_001277694.1 Accepted alive Link to Nucleotide Sequence:NM_001290765.2Link to Protein Sequence:NP_001277694.1Re-query CCDS DB by Nucleotide ID:NM_001290765Re-query CCDS DB by Protein ID:NP_001277694Link to BLAST:NP_001277694.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001277694.1 374 Q8BZH0-2 374 100% 0 0

Chromosomal Locations for CCDS 71095.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 91062903 91062978 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 91063064 91063163 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 91063320 91063452 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 91063656 91063706 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 91064715 91064804 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 91064906 91065007 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 91065582 91065739 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 91066013 91066126 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 91068431 91068731 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1125 nt):
ATGCCTGGATGTCCCTGCCCTGGCTGTGGTATGGCAGGCCAAAGGCTCCTCTTCCTCACTGTCCTTGCCC
TGGAGCTCCTGGAAAGGGCTGGAGGTTCCCAGCCAGCCCTCCGGAGCCTGGGGGCTGCAGCTGCCTGTCG
CCTGGATAATAAAGAAAGCGAGTCCTGGGGGGCTTTGCTGAGTGGGGAGCGACTGGACACCTGGATCTGC
TCCCTCTTGGGCTCTCTCATGGTTGGGCTCAGTGGGGTTTTCCCCTTGCTGGTCATTCCCCTGGAGATGG
GGACCCTGTTACAGTCAGAAGCCGGAGCCTGGCGACTGAGGCAGCTGCTCAGCTTTGCCTTAGGTGGACT
CCTGGGCAACGTGTTTCTGCACCTGCTGCCGGAGGCGTGGGCCTACACCTGTAACATCACCCCCGCCACT
GGCTTGGCATGGCCTGTTAGTGCTCCCCCTGCAGGTGGTGAAGGGCAGAGTCTGCAGCGACAGCAACAAC
TGGGGCTATGGGTCATCGCTGGCTTCCTGACCTTCCTGGCGTTGGAGAAGATGTTCCTCAACAGCAAGGA
GGACCCCAGCCAGGCCCCCAGCAAAGACCCCACTGCTGCCGCGCTCAATGGAGGCCACTGTCTGGCCCAG
CCGGCTGCAGAGCCCGGCCTGAGAGCCGTGGTCCGGAACCTCAAAGTCAGTGGCTATCTCAACCTGCTTG
CCAACACCATAGACAACTTCACTCATGGGCTGGCTGTGGCTGCCAGCTTCCTTGTGAGCAAAAAGATCGG
GCTTCTGACCACCATGGCCATCCTCCTGCATGAGATCCCCCATGAGGTGGGTGACTTTGCTATCCTGCTC
CGGGCTGGCTTTGACCGATGGACGGCAGCTAAGCTACAGTTTTCTACAGCCCTGGGAGGCCTTCTGGGGG
CCTGCTTTGCCATCTGTACACAGTCCCCCAAAGGAGTAGAGGAGACGGTGGTCTGGATCCTGCCCTTCAC
CTCGGGAGGCTTTCTCTATATCGCCCTGGTGAATGTGTTACCTGACCTCTTGGAAGAAGACGACCCGTGG
CACTCCCTGCAACAGGTGCTGCTGCTCTGCTCCGGTGTTCTGGTGATGGTGCTGCTTTCATTGTTTGTTG
AATAA

Translation (374 aa):
MPGCPCPGCGMAGQRLLFLTVLALELLERAGGSQPALRSLGAAAACRLDNKESESWGALLSGERLDTWIC
SLLGSLMVGLSGVFPLLVIPLEMGTLLQSEAGAWRLRQLLSFALGGLLGNVFLHLLPEAWAYTCNITPAT
GLAWPVSAPPAGGEGQSLQRQQQLGLWVIAGFLTFLALEKMFLNSKEDPSQAPSKDPTAAALNGGHCLAQ
PAAEPGLRAVVRNLKVSGYLNLLANTIDNFTHGLAVAASFLVSKKIGLLTTMAILLHEIPHEVGDFAILL
RAGFDRWTAAKLQFSTALGGLLGACFAICTQSPKGVEETVVWILPFTSGGFLYIALVNVLPDLLEEDDPW
HSLQQVLLLCSGVLVMVLLSLFVE


Links Key
 Links to:   History report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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