NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS71016.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
71016.1 Public Mus musculus 2 Trub2 23 108 98 CCDS HistoryNCBI Gene:227682Re-query CCDS DB by CCDS ID:71016.1Re-query CCDS DB by GeneID:227682See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 16, NCBI annotation release 104, Ensembl annotation release 75

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 71016.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000177467.7 ENSMUSP00000135521.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000177467.7Link to Ensembl Protein Viewer:ENSMUSP00000135521.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000177467Re-query CCDS DB by Protein ID:ENSMUSP00000135521
Original member Current member NCBI NM_001290496.1 NP_001277425.1 Accepted alive Link to Nucleotide Sequence:NM_001290496.1Link to Protein Sequence:NP_001277425.1Re-query CCDS DB by Nucleotide ID:NM_001290496Re-query CCDS DB by Protein ID:NP_001277425Link to BLAST:NP_001277425.1

Chromosomal Locations for CCDS 71016.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 29777905 29777956 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 29779823 29779895 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 29782120 29782201 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 29783312 29783373 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 29784953 29785027 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 29786476 29786607 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 29787503 29787611 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (585 nt):
ATGGGTTCTTCTGGCCTAGCTCGGCTGCAGGGGCTCTTCGCTGTCTATAAACCTCCGGGGCTGAAGTGGC
TGCACTTGCGTGAGACCGTGGAGTTGCAACTGCTTAAAGGTCTCAATGCCCAGCAGCCTCCTGCTCCTGA
TCAGCGTGTTCGCTTCTTGCTAGGCCCTGTGGAAGGCAGTGAAGAGAAGAAGTTGACTCTCAGAGCCACC
AATGTACCCTCCCTCACCACCCACAGACTTGTACGTGGTCCAGCATTCACAAACCTGAAGATCGGTGTGG
GACATCGCTTGGATGTCCAGGCTTCTGGTGTGCTTGTGCTCGCCGTGGGACATGGACGCAGCCTCCTCAC
TGACATGTATGATGCTCATCTCACCAAGGATTACACAGTGCGTGGCCTCCTGGGCAAAGCTACAGACAAC
TTCTGTGAAGATGGACGGCTGATAGAGAAGACAACGTATGACCACGTGACCAGAGAGCGGCTGGACCGGA
TCCTGGCTGTGATCCAAGGCTCCCACCAAAAAGCTCTGGTGATAGGTGCAGTGTATGCACGAGACGCAGC
AGCAGCTGAGGAAGCTGGTGCATGA

Translation (194 aa):
MGSSGLARLQGLFAVYKPPGLKWLHLRETVELQLLKGLNAQQPPAPDQRVRFLLGPVEGSEEKKLTLRAT
NVPSLTTHRLVRGPAFTNLKIGVGHRLDVQASGVLVLAVGHGRSLLTDMYDAHLTKDYTVRGLLGKATDN
FCEDGRLIEKTTYDHVTRERLDRILAVIQGSHQKALVIGAVYARDAAAAEEAGA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH