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Report for CCDS70189.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
70189.1 Public Mus musculus 11 Sparc 23 108 98 CCDS HistoryNCBI Gene:20692Re-query CCDS DB by CCDS ID:70189.1Re-query CCDS DB by GeneID:20692See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 16, NCBI annotation release 104, Ensembl annotation release 75

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 70189.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000108858.7 ENSMUSP00000104486.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000108858.7Link to Ensembl Protein Viewer:ENSMUSP00000104486.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000108858Re-query CCDS DB by Protein ID:ENSMUSP00000104486
Original member Current member NCBI NM_001290817.1 NP_001277746.1 Accepted alive Link to Nucleotide Sequence:NM_001290817.1Link to Protein Sequence:NP_001277746.1Re-query CCDS DB by Nucleotide ID:NM_001290817Re-query CCDS DB by Protein ID:NP_001277746Link to BLAST:NP_001277746.1

Chromosomal Locations for CCDS 70189.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 55395585 55395613 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 55395801 55395949 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 55398548 55398696 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 55399192 55399325 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 55401951 55402071 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 55405180 55405301 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 55406510 55406597 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 55407220 55407276 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 55409928 55409984 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (906 nt):
ATGAGGGCCTGGATCTTCTTTCTCCTTTGCCTGGCCGGGAGGGCCCTGGCAGCCCCTCAGACTGAAGTTG
CTGAGGAGATAGTGGAGGAGGAAACCGTGGTGGAGGAGACAGGGGTACCTGTGGGTGCCAACCCAGTCCA
GGTGGAAATGGGAGAATTTGAGGACGGTGCAGAGGAAACGGTCGAGGAGGTGGTGGCTGACAACCCCTGC
CAGAACCATCATTGCAAACATGGCAAGGTGTGTGAGCTGGACGAGAGCAACACCCCCATGTGTGTGTGCC
AGGACCCCACCAGCTGCCCTGCTCCCATTGGCGAGTTTGAGAAGGTATGCAGCAATGACAACAAGACCTT
CGACTCTTCCTGCCACTTCTTTGCCACCAAGTGCACCCTGGAGGGCACCAAGAAGGGCCACAAGCTCCAC
CTGGACTACATCGGACCATGCAAATACATCGCCCCCTGCCTGGATTCCGAGCTGACTGAATTCCCTCTGC
GCATGCGTGACTGGCTCAAAAATGTCCTGGTCACCTTGTACGAGAGAGATGAGGGCAACAACCTCCTCAC
TGAGAAGCAGAAGCTGCGTGTGAAGAAGATCCATGAGAATGAGAAGCGCCTGGAGGCTGGAGACCACCCC
GTGGAGCTGTTGGCCCGAGACTTTGAGAAGAACTACAATATGTACATCTTCCCTGTCCACTGGCAGTTTG
GCCAGCTGGATCAGCACCCTATTGATGGGTACCTGTCCCACACTGAGCTGGCCCCACTGCGCGCTCCCCT
CATCCCCATGGAACATTGCACCACACGTTTCTTTGAGACCTGTGACCTAGACAACGACAAGTACATTGCC
CTGGAGGAATGGGCCGGCTGCTTTGGCATCAAGGAGCAGGACATCAACAAGGATCTGGTGATCTAA

Translation (301 aa):
MRAWIFFLLCLAGRALAAPQTEVAEEIVEEETVVEETGVPVGANPVQVEMGEFEDGAEETVEEVVADNPC
QNHHCKHGKVCELDESNTPMCVCQDPTSCPAPIGEFEKVCSNDNKTFDSSCHFFATKCTLEGTKKGHKLH
LDYIGPCKYIAPCLDSELTEFPLRMRDWLKNVLVTLYERDEGNNLLTEKQKLRVKKIHENEKRLEAGDHP
VELLARDFEKNYNMYIFPVHWQFGQLDQHPIDGYLSHTELAPLRAPLIPMEHCTTRFFETCDLDNDKYIA
LEEWAGCFGIKEQDINKDLVI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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