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Report for CCDS69879.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
69879.1 Public Mus musculus 1 Inpp4a 23 108 98 CCDS HistoryNCBI Gene:269180Re-query CCDS DB by CCDS ID:69879.1Re-query CCDS DB by GeneID:269180See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 16, NCBI annotation release 104, Ensembl annotation release 75

Review status: Reviewed (by RefSeq and Havana)


Attributes
Inferred exon combination

Sequence IDs included in CCDS 69879.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000137266.7 ENSMUSP00000121803.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000137266.7Link to Ensembl Protein Viewer:ENSMUSP00000121803.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000137266Re-query CCDS DB by Protein ID:ENSMUSP00000121803
Original member Current member NCBI NM_001290797.1 NP_001277726.1 Accepted alive Link to Nucleotide Sequence:NM_001290797.1Link to Protein Sequence:NP_001277726.1Re-query CCDS DB by Nucleotide ID:NM_001290797Re-query CCDS DB by Protein ID:NP_001277726Link to BLAST:NP_001277726.1

Chromosomal Locations for CCDS 69879.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 37357919 37358024 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 37358508 37358552 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 37364110 37364228 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 37366163 37366279 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 37366539 37366618 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 37366870 37366981 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 37367757 37367847 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 37368277 37368424 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 37369358 37369488 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 37371702 37371806 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 37372311 37372419 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 37374275 37374289 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 37377578 37377761 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 37378841 37379059 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 37379922 37380177 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 37383339 37383371 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 37387698 37387870 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 37388787 37388910 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 37389650 37389776 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 37390049 37390189 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 37392943 37393040 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 37396070 37396182 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 37398766 37398920 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 37408127 37408259 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2934 nt):
ATGACAGCAAGAGAGCACAGCCCTCGCCATGGTGCCAGGGCCCGTGCGATGCAGCGGGCTTCCACCATTG
ACGTGGCAGCCGACATGGTTGGCCTCTCTTTGGCAGGAAATATCCAAGATCCAGATGAGCCCATTTTAGA
ATTCAGCTTAGCTTGCAGTGAGCTGCACACTCCATCGCTAGATCGAAAACCAAATAGTTTTGTGGCTGTG
AGTGTCACCACCCCTCCGCAGGCGTTCTGGACGAAGCACGCACAGACGGAGATCATCGAGGGAACCAACA
ACCCTATCTTTCTAAGCAGCATTGCCTTCTTTCAAGACTCCCTTATCAATCAGATGACCCAGATCAAGCT
GTCTGTGTATGATGTCAAAGACAGATCTCAGGGAACAATGTACTTACTGGGCTCTGGAACATTCGTGGTC
AAAGATCTGCTCCAGGACAGGCATCACAGATTGCATCTGACACTGAGGTCTGCAGAGAGTGACCGTGTCG
GCAACATAACTGTGATCGGCTGGCAGATGGAGGAGAAGTCCGACCAGCAGCCCCCTGTGACCCGGTCTCT
GGACACTGTCAATGGAAGGATGGTTCTGCCCGTTGATGAAAGCTTGACTGAGGCCTTGGGAATCCGATCC
AAATATGCTTCTTTGCGAAAAGACAGCTTACTGAAAGCAGTGTTTGGTGGTGCCATCTGCCGCATGTACC
GCTTCCCAACTACTGATGGTAACCACCTACGGATCCTGGAGCAGATGGCAGAGAGCGTCCTCTCCCTGCA
CGTGCCTCGGCAGTTTGTGAAGCTACTGCTGGAAGAAGATGCAGCCAGGGTATGTGAGTTGGAAGAGTTG
GGGGAGCTGTCCCCTTGCTGGGAGAGCCTCCGGCGCCAGATTGTCACCCAGTATCAGACTATCATCCTCA
CCTACCAGGAGAATCTGACTGACCTCCATCAGTACAAAGGTCCTTCCTTTAAAGCAAGCAGTTTGAAAGC
AGATAAAAAGTTAGAATTTGTTCCCACAAACCTGCACATACAACGGATGCGAGTTCAAGATGATGGAGGC
TCAGATCAGAACTACGATGTCGTCACTATTGGAGCCCCAGCAGCACACTGCCAAGGTTTTAAGTCAGGAG
GTCTTCGAAAAAAGCTGCACAAGTTTGAAGAGGCCAAGAAACATTTTGAGGAGTGTTGTACATCTTCTAG
TGGCCAGTCCATCATCTACATACCACAGGACATCACCCGAGCCAAGGAGATCATTGCCCAGATCAACACC
CTAAAAACCCAGGTCAGCTACTACGCGGAACGGCTCTCAAGGGCTGCGAAGGACAGGTCAGCTACTGGCC
TTGAGAGGACTCTCGCCATCTTGGCAGACAAGACTCGGCAGTTGGTGACTGTCTGTGACTGTAAGCTGCT
GGCCAACTCCATCCATGGGCTGAATGCAGCTCGGCCCGACTACATCGCTTCCAAGGCCTCCCCTACCTCG
ACTGAGGAGGAGCAGGTGATGCTTCGGAATGACCAGGACACCCTGATGGCCAGGTGGGCGGGGAGAAGCA
GCCGGTCTTCCCTGCAGGTGGACTGGCATGAGGAGGAGTGGGAGAAAGTGTGGCTGAATGTGGACAAGAG
CCTGGAGTGCATCATTCAGCGGGTGGACAAGCTGCTGCAGAAGGAGCGTCTGCATGGGGAGGGCTGCGAG
GATGCTTTCCCCTGTTCGAGCACCTGCTCCAGCAAGAAAGGTAACCGGGACAGCCAAGCCTACTGGATCC
GACCGGAGGACCCCTTGTGTGACGCCCCCTCCTCGACATGCCCCTCCTCCATGCCCACTGCCGCATGCCA
TCCTCATTCAAGCACACATTGCAGCCCCCCTCCTGAAGAGTCCAGTCCAGGTGAGTGGAGCGAGGCCCTT
TACCCTCTGCTGACCACCCTCACAGACTGTGTGGCCATGATGAGCGACAAGGCCAAGGCAGCCATGGTCT
TCCTGCTCATGCAGGACAGTGCCCCCACCATTGCCTCGTACCTCAGCCTGCAGTATCGCCGTGACGTCGT
CTTCTGCCAAACCCTGACAGCCCTCATCTGTGGCTTTATCATCAAGCTGAGGAACTGCCTGCACGACGGT
GGCTTCCTGCGGCAGCTCTACACCATCGGCCTTCTGGCCCAGTTTGAGAGCCTGCTGAGCACCTACGGAG
AGGAGTTGGCCATGTTGGAGGACATGAGCCTTGGAATCATGGACCTGAGGAATGTGACCTTTAAAGTCAC
TCAGGCCACTTCGAATGCATCAAATGACATGCTGCCGGTCATCACAGGAAACCGGGATGGCTTTAACGTG
CGGATCCCTCTGCCAGGCCCACTGTTTGACTCCCTCCCCAGAGAGATCCAGAGTGGCATGCTGCTGCGGG
TGCAGCCTGTCCTCTTCAACGTGGGCATCAATGAGCAACAGACACTGGCTGAGAGGTTTGGAGATACGTC
CTTACAAGAAGTTATCAATGTGGAGAGCTTGGTGCGGTTAAATTCCTACTTTGAGCAGTTTAAGGAGGTT
TTGCCGGAGGACTGTCTACCTCGATCTCGGAGTCAGACCTGCCTTCCAGAGCTGCTGCGGTTCCTGGGAC
AGAATGTCCATGCACGCAAGAATAAGAATGTGGACATCCTCTGGCAAGCTGCTGAGGTCTGTCGCCGCCT
TAACGGGGTCCGATTCACCAGCTGCAAGAGTGCCAAGGACCGCACAGCCATGTCGGTGACCCTGGAGCAG
TGTCTGATCCTGCAGCACGAGCACGGCATGGCCCCGCAGGTCTTCACACAAGCCCTGGAGTGCATGCGCA
GTGAGGGTTGTCGGCGAGAAAACACAATGAAGAATGTTGGAAGTCGCAAATATGCATTTAACTCCCTGCA
GCTGAAGGCCTTCCCCAAGCATTACAGGCCTCCAGAAGGGACTTACGGAAAAGTTGAGACATGA

Translation (977 aa):
MTAREHSPRHGARARAMQRASTIDVAADMVGLSLAGNIQDPDEPILEFSLACSELHTPSLDRKPNSFVAV
SVTTPPQAFWTKHAQTEIIEGTNNPIFLSSIAFFQDSLINQMTQIKLSVYDVKDRSQGTMYLLGSGTFVV
KDLLQDRHHRLHLTLRSAESDRVGNITVIGWQMEEKSDQQPPVTRSLDTVNGRMVLPVDESLTEALGIRS
KYASLRKDSLLKAVFGGAICRMYRFPTTDGNHLRILEQMAESVLSLHVPRQFVKLLLEEDAARVCELEEL
GELSPCWESLRRQIVTQYQTIILTYQENLTDLHQYKGPSFKASSLKADKKLEFVPTNLHIQRMRVQDDGG
SDQNYDVVTIGAPAAHCQGFKSGGLRKKLHKFEEAKKHFEECCTSSSGQSIIYIPQDITRAKEIIAQINT
LKTQVSYYAERLSRAAKDRSATGLERTLAILADKTRQLVTVCDCKLLANSIHGLNAARPDYIASKASPTS
TEEEQVMLRNDQDTLMARWAGRSSRSSLQVDWHEEEWEKVWLNVDKSLECIIQRVDKLLQKERLHGEGCE
DAFPCSSTCSSKKGNRDSQAYWIRPEDPLCDAPSSTCPSSMPTAACHPHSSTHCSPPPEESSPGEWSEAL
YPLLTTLTDCVAMMSDKAKAAMVFLLMQDSAPTIASYLSLQYRRDVVFCQTLTALICGFIIKLRNCLHDG
GFLRQLYTIGLLAQFESLLSTYGEELAMLEDMSLGIMDLRNVTFKVTQATSNASNDMLPVITGNRDGFNV
RIPLPGPLFDSLPREIQSGMLLRVQPVLFNVGINEQQTLAERFGDTSLQEVINVESLVRLNSYFEQFKEV
LPEDCLPRSRSQTCLPELLRFLGQNVHARKNKNVDILWQAAEVCRRLNGVRFTSCKSAKDRTAMSVTLEQ
CLILQHEHGMAPQVFTQALECMRSEGCRRENTMKNVGSRKYAFNSLQLKAFPKHYRPPEGTYGKVET


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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