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Report for CCDS68347.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
68347.1 Public Homo sapiens 3 TMEM40 24 110 108 CCDS HistoryNCBI Gene:55287Re-query CCDS DB by CCDS ID:68347.1Re-query CCDS DB by GeneID:55287See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 15, NCBI annotation release 105, Ensembl annotation release 74

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 68347.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000435575.5 ENSP00000396895.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000435575.5Link to Ensembl Protein Viewer:ENSP00000396895.1Re-query CCDS DB by Nucleotide ID:ENST00000435575Re-query CCDS DB by Protein ID:ENSP00000396895
Original member Current member NCBI NM_001284408.2 NP_001271337.1 Accepted alive Link to Nucleotide Sequence:NM_001284408.2Link to Protein Sequence:NP_001271337.1Re-query CCDS DB by Nucleotide ID:NM_001284408Re-query CCDS DB by Protein ID:NP_001271337Link to BLAST:NP_001271337.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001271337.1 157 Q8WWA1-3 157 100% 0 0

Chromosomal Locations for CCDS 68347.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 12734774 12734793 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 12735555 12735617 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 12736578 12736652 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 12736764 12736835 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 12737707 12737754 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 12738136 12738168 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 12738553 12738588 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 12742454 12742507 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 12749760 12749832 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (474 nt):
ATGGAGACTTCAGCATCCTCCTCCCAGCCTCAGGACAACAGTCAAGTCCACAGAGAAACAGAAGATGTAG
ACTGTCCTGGGCATGGGGAGCCTGACGTTTTGAAGGATGAGCTTCAACTCTATGGAGATGCTCCTGGAGA
GGTGGTACCCTCTGGGGAATCAGGACTCCGAAGGAGAGGCTCTGACCCAGCAAGTGGAGAAGTGGAGGCC
TCTCAGTTAAGAAGACTGAATATAAAGAAAGATGATGAGTTTTTCCATTTCGTCCTCCTGTGCTTTGCCA
TCGGGGCCTTGCTGGTGTGTTATCACTATTACGCAGACTGGTTCATGTCTCTTGGGGTCGGCCTGCTCAC
CTTCGCCTCCCTGGAAACCGTTGGCATCTACTTCGGACTAGTGTACCGTATCCACAGCGTCCTCCAAGGC
TTCATCCCCCTCTTCCAGAAGTTTAGGCTGACAGGGTTCAGGAAGACTGACTGA

Translation (157 aa):
METSASSSQPQDNSQVHRETEDVDCPGHGEPDVLKDELQLYGDAPGEVVPSGESGLRRRGSDPASGEVEA
SQLRRLNIKKDDEFFHFVLLCFAIGALLVCYHYYADWFMSLGVGLLTFASLETVGIYFGLVYRIHSVLQG
FIPLFQKFRLTGFRKTD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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