CCDS Report for Consensus CDS

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Report for CCDS670.1 (current version)

CCDS	Status	Species	Chrom.	Gene	CCDS Release	NCBI Annotation Release	Ensembl Annotation Release	Links
670.1	Public	Homo sapiens	1	MSH4	24	110	108

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 670.1

Original	Current	Source	Nucleotide ID	Protein ID	MANE	Status in CCDS	Seq. Status	Links
		EBI	ENST00000263187.4	ENSP00000263187.3	MANE Select	Accepted	alive
		NCBI	NM_002440.4	NP_002431.2	MANE Select	Accepted	alive

RefSeq	Length	Related UniProtKB/SwissProt	Length	Identity	Gaps	Mismatches
NP_002431.2	936	O15457	936	100%	0	0

Chromosomal Locations for CCDS 670.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)

Genome Browser links:

Chromosome	Start	Stop
1	75796986	75797229
1	75803731	75803913
1	75806981	75807141
1	75810697	75810807
1	75815021	75815136
1	75816373	75816546
1	75822409	75822581
1	75848209	75848276
1	75867514	75867588
1	75876936	75877000
1	75878149	75878318
1	75878992	75879128
1	75880050	75880153
1	75881246	75881370
1	75883621	75883821
1	75889251	75889369
1	75890696	75890824
1	75897907	75898081
1	75899618	75899706
1	75912696	75912887

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.

Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2811 nt):
ATGCTGAGGCCTGAGATCTCATCAACCTCGCCTTCTGCCCCGGCGGTTTCCCCGTCGTCGGGAGAAACCC GCTCACCTCAGGGTCCCCGCTACAATTTCGGACTCCAGGAGACTCCACAGAGCCGCCCTTCGGTCCAGGT GGTCTCTGCATCCACCTGTCCTGGCACGTCAGGAGCTGCGGGCGACCGGAGCAGCAGCAGCAGCAGCCTT CCCTGCCCCGCGCCAAACTCCCGGCCAGCTCAAGGTTCATACTTTGGAAACAAAAGAGCTTATGCAGAAA ACACAGTTGCATCAAATTTTACTTTTGGTGCAAGCTCATCTTCTGCACGAGATACTAATTATCCTCAAAC ACTTAAAACTCCATTGTCTACTGGAAATCCTCAGAGATCAGGTTATAAGAGCTGGACACCACAAGTGGGA TATTCAGCTTCATCCTCATCTGCGATTTCTGCACACTCCCCATCAGTTATTGTAGCTGTTGTAGAAGGGA GAGGACTTGCCAGAGGTGAAATAGGAATGGCAAGTATTGATTTAAAAAACCCCCAAATTATACTATCCCA GTTTGCAGACAACACAACATATGCAAAGGTGATCACTAAACTTAAAATTTTATCACCTTTGGAAATAATA ATGTCAAATACTGCTTGTGCTGTGGGGAATTCCACCAAGTTGTTCACTCTGATCACAGAAAATTTCAAGA ATGTTAATTTCACTACTATCCAAAGGAAATACTTCAATGAAACAAAAGGATTAGAGTACATTGAACAGTT ATGCATAGCAGAATTCAGCACTGTCCTAATGGAGGTTCAGTCCAAGTATTACTGCCTTGCAGCTGTTGCA GCTTTGTTAAAATATGTTGAATTTATTCAAAATTCAGTTTATGCACCAAAATCACTGAAGATTTGTTTCC AGGGTAGTGAACAGACAGCCATGATAGATTCATCATCAGCCCAAAACCTTGAATTGTTAATTAATAATCA AGACTATAGGAATAATCACACTCTCTTTGGTGTTCTAAATTATACTAAGACTCCTGGAGGGAGTAGACGA CTTCGTTCTAATATATTAGAGCCTCTAGTTGATATTGAAACCATTAACATGAGATTAGATTGTGTTCAAG AACTACTTCAAGATGAGGAACTATTTTTTGGACTTCAATCAGTTATATCAAGATTTCTTGATACAGAGCA GCTTCTTTCTGTTTTAGTCCAAATTCCAAAGCAAGACACGGTCAATGCTGCTGAATCAAAGATAACAAAT TTAATATACTTAAAACATACCTTGGAACTTGTGGATCCTTTAAAGATTGCTATGAAGAACTGTAACACAC CTTTATTAAGAGCTTACTATGGTTCCTTGGAAGACAAGAGGTTTGGAATCATACTTGAAAAGATTAAAAC AGTAATTAATGATGATGCAAGATACATGAAAGGATGCCTAAACATGAGGACTCAGAAGTGCTATGCAGTG AGGTCTAACATAAATGAATTTCTTGACATAGCAAGAAGAACATACACAGAGATTGTAGATGACATAGCAG GAATGATATCACAACTTGGAGAAAAATATAGTCTACCTTTAAGGACAAGTTTTAGCTCTGCTCGAGGATT TTTCATCCAGATGACTACAGATTGTATAGCCCTACCTAGTGATCAACTTCCTTCAGAATTTATTAAGATT TCTAAAGTGAAAAATTCTTACAGCTTTACATCAGCAGATTTAATTAAAATGAATGAAAGATGCCAAGAAT CTTTGAGAGAAATCTATCACATGACTTATATGATAGTGTGCAAACTGCTTAGTGAGATTTATGAACATAT TCATTGCTTATATAAACTATCTGACACTGTGTCAATGCTGGATATGCTACTGTCATTTGCTCATGCCTGC ACTCTTTCTGACTATGTTCGACCAGAATTTACTGATACTTTAGCAATCAAACAGGGATGGCATCCTATTC TTGAAAAAATATCTGCGGAAAAACCTATTGCCAACAATACCTATGTTACAGAAGGGAGTAATTTTTTGAT CATAACTGGACCAAACATGAGTGGAAAATCCACATATTTAAAACAGATTGCTCTTTGTCAGATTATGGCC CAGATTGGATCATATGTTCCAGCAGAATATTCTTCCTTTAGAATTGCTAAACAGATTTTTACAAGAATTA GTACTGATGATGATATCGAAACAAATTCATCAACATTTATGAAAGAAATGAAAGAGATAGCATATATTCT ACATAATGCTAATGACAAATCGCTCATATTAATTGATGAACTTGGCAGAGGTACTAATACGGAAGAAGGT ATTGGCATTTGTTATGCTGTTTGTGAATATCTACTGAGCTTAAAGGCATTTACACTGTTTGCTACACATT TCCTGGAACTATGCCATATTGATGCCCTGTATCCTAATGTAGAAAACATGCATTTTGAAGTTCAACATGT AAAGAATACCTCAAGAAATAAAGAAGCAATTTTGTATACCTACAAACTTTCTAAGGGACTCACAGAAGAG AAAAATTATGGATTAAAAGCTGCAGAGGTGTCATCACTTCCACCATCAATTGTCTTGGATGCCAAGGAAA TCACAACTCAAATTACGAGACAAATTTTGCAAAACCAAAGGAGTACCCCTGAGATGGAAAGACAGAGAGC TGTGTACCATCTAGCCACTAGGCTTGTTCAAACTGCTCGAAACTCTCAATTGGATCCAGACAGTTTACGA ATATATTTAAGTAACCTCAAGAAGAAGTACAAAGAAGATTTTCCCAGGACTGAACAAGTTCCAGAAAAGA CTGAAGAATAA
Translation (936 aa):
MLRPEISSTSPSAPAVSPSSGETRSPQGPRYNFGLQETPQSRPSVQVVSASTCPGTSGAAGDRSSSSSSL PCPAPNSRPAQGSYFGNKRAYAENTVASNFTFGASSSSARDTNYPQTLKTPLSTGNPQRSGYKSWTPQVG YSASSSSAISAHSPSVIVAVVEGRGLARGEIGMASIDLKNPQIILSQFADNTTYAKVITKLKILSPLEII MSNTACAVGNSTKLFTLITENFKNVNFTTIQRKYFNETKGLEYIEQLCIAEFSTVLMEVQSKYYCLAAVA ALLKYVEFIQNSVYAPKSLKICFQGSEQTAMIDSSSAQNLELLINNQDYRNNHTLFGVLNYTKTPGGSRR LRSNILEPLVDIETINMRLDCVQELLQDEELFFGLQSVISRFLDTEQLLSVLVQIPKQDTVNAAESKITN LIYLKHTLELVDPLKIAMKNCNTPLLRAYYGSLEDKRFGIILEKIKTVINDDARYMKGCLNMRTQKCYAV RSNINEFLDIARRTYTEIVDDIAGMISQLGEKYSLPLRTSFSSARGFFIQMTTDCIALPSDQLPSEFIKI SKVKNSYSFTSADLIKMNERCQESLREIYHMTYMIVCKLLSEIYEHIHCLYKLSDTVSMLDMLLSFAHAC TLSDYVRPEFTDTLAIKQGWHPILEKISAEKPIANNTYVTEGSNFLIITGPNMSGKSTYLKQIALCQIMA QIGSYVPAEYSSFRIAKQIFTRISTDDDIETNSSTFMKEMKEIAYILHNANDKSLILIDELGRGTNTEEG IGICYAVCEYLLSLKAFTLFATHFLELCHIDALYPNVENMHFEVQHVKNTSRNKEAILYTYKLSKGLTEE KNYGLKAAEVSSLPPSIVLDAKEITTQITRQILQNQRSTPEMERQRAVYHLATRLVQTARNSQLDPDSLR IYLSNLKKKYKEDFPRTEQVPEKTEE

	Links Key
	Links to:	History report BLAST report Entrez Gene Nucleotide report Protein report
	Re-query CCDS DB by:	CCDS ID Gene ID Nucleotide ID Protein ID
	Genome Browser Links:	Ensembl Genome Browser NCBI Sequence Viewer UCSC Genome Browser VEGA Genome Browser

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