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Report for CCDS64234.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
64234.1 Public Homo sapiens 5 SNX2 24 110 108 CCDS HistoryNCBI Gene:6643Re-query CCDS DB by CCDS ID:64234.1Re-query CCDS DB by GeneID:6643See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 14, NCBI annotation release 105, Ensembl annotation release 73

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 64234.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000514949.1 ENSP00000421663.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000514949.1Link to Ensembl Protein Viewer:ENSP00000421663.1Re-query CCDS DB by Nucleotide ID:ENST00000514949Re-query CCDS DB by Protein ID:ENSP00000421663
Original member Current member NCBI NM_001278199.1 NP_001265128.1 Accepted alive Link to Nucleotide Sequence:NM_001278199.1Link to Protein Sequence:NP_001265128.1Re-query CCDS DB by Nucleotide ID:NM_001278199Re-query CCDS DB by Protein ID:NP_001265128Link to BLAST:NP_001265128.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001265128.1 402 O60749-2 402 100% 0 0

Chromosomal Locations for CCDS 64234.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 122799817 122799855 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 122801869 122801935 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 122802081 122802124 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 122803472 122803613 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 122808277 122808355 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 122815896 122815971 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 122816915 122817028 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 122817280 122817373 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 122818818 122819023 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 122826050 122826193 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 122827379 122827459 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 122827575 122827646 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 122829598 122829648 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1209 nt):
ATGTCTGCTCCCGTGATCTTTGATAGATCCAGGGAAGAGATTGAAGAAGAAGCAAATGGAGACATTTTTG
ACATAGAAATTGGTGTATCAGATCCAGAAAAAGTTGGTGATGGCATGAATGCCTATATGGCATATAGAGT
AACAACAAAGACATCTCTTTCCATGTTCAGTAAGAGTGAATTTTCAGTGAAAAGAAGATTCAGCGACTTT
CTTGGTTTGCACAGCAAATTAGCAAGCAAATATTTACATGTTGGTTATATTGTGCCACCAGCTCCAGAAA
AGAGTATAGTAGGGATGACCAAGGTCAAAGTGGGTAAAGAAGACTCATCATCCACTGAGTTTGTAGAAAA
ACGGAGAGCAGCTCTTGAAAGGTATCTTCAAAGAACAGTAAAACATCCAACTTTACTACAGGATCCTGAT
TTAAGGCAGTTCTTGGAAAGTTCAGAGCTGCCTAGAGCAGTTAATACACAGGCTCTGAGTGGAGCAGGAA
TATTGAGGATGGTGAACAAGGCTGCCGACGCTGTCAACAAAATGACAATCAAGATGAATGAATCGGATGC
ATGGTTTGAAGAAAAGCAGCAGCAATTTGAGAATCTGGATCAGCAACTTAGGAAACTTCATGTCAGTGTT
GAAGCCTTGGTCTGTCATAGAAAAGAACTTTCAGCCAACACAGCTGCCTTTGCTAAAAGTGCTGCCATGT
TAGGTAATTCTGAGGATCATACTGCTTTATCTAGAGCTTTGTCTCAGCTTGCAGAGGTTGAGGAGAAGAT
AGACCAGTTACATCAAGAACAAGCTTTTGCTGACTTTTATATGTTTTCAGAACTACTTAGTGACTACATT
CGTCTTATTGCTGCAGTGAAAGGTGTGTTTGACCATCGAATGAAGTGCTGGCAGAAATGGGAAGATGCTC
AAATTACTTTGCTCAAAAAACGTGAAGCTGAAGCAAAAATGATGGTTGCTAACAAACCAGATAAAATACA
GCAAGCTAAAAATGAAATAAGAGAGTGGGAGGCGAAAGTGCAACAAGGGGAAAGAGATTTTGAACAGATA
TCTAAAACGATTCGAAAAGAAGTGGGAAGATTTGAGAAAGAACGAGTGAAGGATTTTAAAACCGTTATCA
TCAAGTACTTAGAATCACTAGTTCAAACACAACAACAGCTGATAAAATACTGGGAAGCATTCCTACCTGA
AGCCAAAGCCATTGCCTAG

Translation (402 aa):
MSAPVIFDRSREEIEEEANGDIFDIEIGVSDPEKVGDGMNAYMAYRVTTKTSLSMFSKSEFSVKRRFSDF
LGLHSKLASKYLHVGYIVPPAPEKSIVGMTKVKVGKEDSSSTEFVEKRRAALERYLQRTVKHPTLLQDPD
LRQFLESSELPRAVNTQALSGAGILRMVNKAADAVNKMTIKMNESDAWFEEKQQQFENLDQQLRKLHVSV
EALVCHRKELSANTAAFAKSAAMLGNSEDHTALSRALSQLAEVEEKIDQLHQEQAFADFYMFSELLSDYI
RLIAAVKGVFDHRMKCWQKWEDAQITLLKKREAEAKMMVANKPDKIQQAKNEIREWEAKVQQGERDFEQI
SKTIRKEVGRFEKERVKDFKTVIIKYLESLVQTQQQLIKYWEAFLPEAKAIA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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