NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS6304.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
6304.2 Public Homo sapiens 8 OXR1 24 110 108 CCDS HistoryNCBI Gene:55074Re-query CCDS DB by CCDS ID:6304.2Re-query CCDS DB by GeneID:55074See the combined annotation on chromosome 8 in Sequence Viewer

Public Note for CCDS 6304.1
The coding region has been updated to extend the N-terminus to one that is more supported by available transcript and conservation data.

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 6304.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000312046.10 ENSP00000311026.6 Accepted alive Link to Ensembl Transcript Viewer:ENST00000312046.10Link to Ensembl Protein Viewer:ENSP00000311026.6Re-query CCDS DB by Nucleotide ID:ENST00000312046Re-query CCDS DB by Protein ID:ENSP00000311026
Original member Current member NCBI NM_181354.4 NP_851999.2 Accepted alive Link to Nucleotide Sequence:NM_181354.4Link to Protein Sequence:NP_851999.2Re-query CCDS DB by Nucleotide ID:NM_181354Re-query CCDS DB by Protein ID:NP_851999Link to BLAST:NP_851999.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_851999.2 839 Q8N573-2 839 100% 0 0

Chromosomal Locations for CCDS 6304.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 8 (NC_000008.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 106657987 106658185 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 106679210 106679292 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 106683199 106683306 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 106684246 106684359 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 106692728 106692877 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 106702906 106703090 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 106706382 106707145 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 106710622 106710790 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 106713823 106713985 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 106739458 106739583 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 106740343 106740495 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 106742222 106742317 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 106745789 106745862 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 106750806 106750941 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2520 nt):
ATGGACTACCTGACGACGTTCACCGAGAAGAGTGGGCGCCTTCTGCGGGGCACGGCCAACCGCCTGTTGG
GGTTCGGGGGCGGCGGCGAAGCCCGGCAGGTGCGCTTCGAAGATTACCTGAGGGAGCCAGCCCAGGGGGA
CCTCGGGTGCGGGTCCCCGCCCCACCGGCCCCCGGCGCCGTCCAGCCCGGAGGGACCTGACACTGGCCAA
AAGAAGACCCTAGACAAGAAAGATGGAAGACGAATGTCTTTTCAGAAACCTAAAGGGACTATTGAGTATA
CTGTTGAATCAAGGGATTCTTTGAATAGCATAGCCCTGAAGTTTGATACAACACCTAACGAACTTGTTCA
ATTAAATAAGTTATTCTCCCGAGCAGTTGTTACTGGACAGGTTCTGTATGTTCCTGATCCTGAATATGTC
TCCAGTGTTGAGAGCTCTCCATCTCTAAGCCCCGTAAGTCCTCTGTCACCAACATCATCTGAGGCTGAAT
TTGATAAGACCACTAATCCTGATGTCCATCCAACAGAAGCAACTCCCTCATCTACTTTCACTGGTATTCG
ACCTGCACGAGTTGTATCTTCAACTTCTGAGGAGGAGGAAGCATTTACTGAGAAATTTCTTAAAATTAAT
TGCAAATATATTACCAGTGGCAAGGGCACAGTCAGTGGTGTGCTGCTAGTTACACCAAATAATATAATGT
TTGATCCACATAAAAATGACCCTTTGGTTCAAGAGAATGGCTGTGAGGAATATGGCATCATGTGTCCAAT
GGAAGAGGTGATGTCAGCTGCAATGTACAAAGAAATTTTGGATAGCAAAATAAAGGAATCTTTACCCATA
GATATAGATCAGCTATCAGGAAGGGACTTCTGCCATTCAAAGAAAATGACAGGAAGTAACACTGAGGAAA
TAGACTCAAGAATCCGAGATGCAGGTAATGATAGTGCCAGCACTGCTCCTAGGAGCACTGAGGAGTCTCT
TTCTGAAGATGTGTTCACAGAATCAGAACTTTCCCCTATACGAGAGGAGCTTGTATCTTCAGATGAACTG
CGACAAGATAAATCTTCTGGTGCGTCATCAGAATCTGTGCAAACTGTCAATCAGGCTGAAGTAGAAAGTC
TGACAGTCAAATCAGAATCTACTGGTACTCCTGGTCACTTAAGATCTGATACTGAACATTCTACAAATGA
AGTTGGGACTTTATGTCATAAAACTGATTTAAATAATCTTGAAATGGCCATTAAGGAAGATCAGATTGCA
GATAACTTTCAAGGAATATCAGGTCCTAAAGAAGACAGCACAAGTATAAAAGGTAATTCAGACCAGGATT
CTTTTCTTCATGAGAATTCGTTACACCAAGAAGAGAGTCAAAAAGAAAATATGCCTTGTGGGGAAACAGC
AGAATTTAAACAAAAGCAAAGTGTTAACAAAGGAAAACAAGGAAAGGAGCAAAATCAGGACTCACAGACA
GAGGCAGAAGAGCTACGCAAACTTTGGAAAACCCATACTATGCAACAAACTAAACAGCAAAGGGAAAATA
TTCAACAAGTGTCACAAAAAGAAGCTAAGCATAAAATTACATCTGCTGATGGACACATAGAAAGTTCTGC
ACTTTTAAAAGAAAAGCAAAGGCATCGATTACATAAGTTCTTGTGTCTCAGAGTTGGAAAACCAATGAGG
AAAACGTTTGTATCTCAAGCAAGTGCTACAATGCAACAGTATGCACAGAGAGATAAGAAACATGAATATT
GGTTTGCTGTGCCACAAGAAAGGACAGATCACTTGTATGCCTTCTTCATTCAGTGGAGTCCAGAAATATA
TGCAGAAGATACTGGCGAATATACCAGAGAACCTGGATTTATAGTAGTAAAAAAGATTGAGGAGTCTGAA
ACAATTGAGGATTCTAGTAATCAAGCAGCAGCCAGAGAATGGGAGATTACTACAAGGGAAGACATAAATT
CAAAGCAGGTTGCTACAGTGAAAGCAGACCTGGAGTCTGAATCTTTTCGACCAAACCTAAGTGATCCCAG
TGAACTTTTACTGCCAGATCAAATTGAAAAGCTTACCAAGCATCTTCCACCAAGAACAATTGGCTATCCA
TGGACTCTTGTTTATGGTACTGGAAAACATGGCACAAGCTTGAAAACTCTTTATCGAACAATGACAGGTT
TAGACACCCCAGTGCTGATGGTGATTAAAGACAGTGATGGACAGGTTTTTGGTGCGTTAGCATCTGAGCC
ACTGAAAGTGAGTGATGGCTTTTATGGTACTGGAGAGACCTTTGTTTTTACATTCTGTCCGGAGTTTGAG
GTCTTTAAGTGGACAGGAGATAATATGTTTTTTATCAAAGGAGACATGGATTCACTAGCTTTCGGTGGTG
GAGGAGGAGAATTTGCGCTTTGGCTTGATGGAGATCTCTACCATGGAAGAAGCCATTCTTGTAAAACGTT
TGGGAATCGTACACTTTCTAAGAAGGAAGATTTCTTTATCCAAGATATTGAAATCTGGGCTTTTGAATAA

Translation (839 aa):
MDYLTTFTEKSGRLLRGTANRLLGFGGGGEARQVRFEDYLREPAQGDLGCGSPPHRPPAPSSPEGPDTGQ
KKTLDKKDGRRMSFQKPKGTIEYTVESRDSLNSIALKFDTTPNELVQLNKLFSRAVVTGQVLYVPDPEYV
SSVESSPSLSPVSPLSPTSSEAEFDKTTNPDVHPTEATPSSTFTGIRPARVVSSTSEEEEAFTEKFLKIN
CKYITSGKGTVSGVLLVTPNNIMFDPHKNDPLVQENGCEEYGIMCPMEEVMSAAMYKEILDSKIKESLPI
DIDQLSGRDFCHSKKMTGSNTEEIDSRIRDAGNDSASTAPRSTEESLSEDVFTESELSPIREELVSSDEL
RQDKSSGASSESVQTVNQAEVESLTVKSESTGTPGHLRSDTEHSTNEVGTLCHKTDLNNLEMAIKEDQIA
DNFQGISGPKEDSTSIKGNSDQDSFLHENSLHQEESQKENMPCGETAEFKQKQSVNKGKQGKEQNQDSQT
EAEELRKLWKTHTMQQTKQQRENIQQVSQKEAKHKITSADGHIESSALLKEKQRHRLHKFLCLRVGKPMR
KTFVSQASATMQQYAQRDKKHEYWFAVPQERTDHLYAFFIQWSPEIYAEDTGEYTREPGFIVVKKIEESE
TIEDSSNQAAAREWEITTREDINSKQVATVKADLESESFRPNLSDPSELLLPDQIEKLTKHLPPRTIGYP
WTLVYGTGKHGTSLKTLYRTMTGLDTPVLMVIKDSDGQVFGALASEPLKVSDGFYGTGETFVFTFCPEFE
VFKWTGDNMFFIKGDMDSLAFGGGGGEFALWLDGDLYHGRSHSCKTFGNRTLSKKEDFFIQDIEIWAFE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH