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Report for CCDS61779.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
61779.1 Public Homo sapiens 16 RHBDL1 24 110 108 CCDS HistoryNCBI Gene:9028Re-query CCDS DB by CCDS ID:61779.1Re-query CCDS DB by GeneID:9028See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 14, NCBI annotation release 105, Ensembl annotation release 73

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 61779.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000352681.8 ENSP00000344206.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000352681.8Link to Ensembl Protein Viewer:ENSP00000344206.3Re-query CCDS DB by Nucleotide ID:ENST00000352681Re-query CCDS DB by Protein ID:ENSP00000344206
Original member Current member NCBI NM_001278720.2 NP_001265649.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001278720.2Link to Protein Sequence:NP_001265649.1Re-query CCDS DB by Nucleotide ID:NM_001278720Re-query CCDS DB by Protein ID:NP_001265649Link to BLAST:NP_001265649.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001265649.1 373 O75783-2 373 100% 0 0

Chromosomal Locations for CCDS 61779.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 675791 675829 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 676336 676497 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 676672 676896 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 676971 677119 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 677276 677388 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 677459 677559 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 677639 677699 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 677781 678052 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1122 nt):
ATGGACAGGAGCTCGCTGCTGCAGCTCATCCAGGAGCAGCAGCTGGACCCCGAGAACACAGGCTTCATCG
GTGCGGACACCTTCACTGGCCTGGTGCACAGCCATGAGCTGCCCCTGGACCCGGCCAAGCTGGACATGCT
GGTGGCCCTGGCTCAGAGCAACGAGCAGGGCCAGGTCTGCTACCAGGAGCTGGTGGACCTGATCAGCAGC
AAGCGCTCCAGCAGTTTCAAGCGGGCCATTGCTAACGGACAGCGGGCACTGCCCCGGGACGGGCCGCTGG
ATGAGCCAGGCCTAGGTGTCTACAAGCGGTTTGTGCGTTACGTGGCCTACGAGATCCTGCCTTGTGAGGT
GGACCGCCGCTGGTACTTCTACCGTCACCGCAGCTGCCCACCCCCCGTGTTCATGGCCTCGGTCACTCTT
GCCCAGATCATCGTGTTCCTGTGTTACGGGGCCCGCCTCAACAAGTGGGTGCTGCAGACCTACCACCCCG
AGTACATGAAGAGCCCCCTTGTGTACCACCCCGGGCACCGTGCCCGCGCCTGGCGCTTCCTCACCTACAT
GTTCATGCACGTTGGGCTGGAGCAGCTGGGGTTCAACGCCCTCCTGCAGCTGATGATCGGGGTGCCCCTG
GAGATGGTGCACGGCCTGCTCCGCATCAGCCTGCTCTACCTGGCAGGCGTGCTGGCAGGCTCCCTAACCG
TCTCCATCACCGACATGCGGGCCCCGGTGGTGGGAGGCTCCGGCGGGGTCTACGCCCTGTGCTCGGCACA
CCTGGCCAACGTTGTCATGAACTGGGCTGGGATGAGATGTCCCTACAAGTTGCTGAGGATGGTGCTGGCC
TTGGTGTGCATGAGCTCCGAGGTGGGCCGGGCCGTGTGGCTGCGCTTCTCCCCGCCGCTGCCCGCCTCGG
GCCCACAGCCCAGCTTCATGGCGCACCTGGCAGGCGCGGTGGTGGGGGTGAGCATGGGCCTGACCATCCT
GCGGAGCTACGAGGAGCGCCTGCGGGACCAGTGCGGCTGGTGGGTGGTGCTGCTGGCCTACGGCACCTTC
CTGCTCTTCGCCGTCTTCTGGAACGTCTTCGCCTACGACCTGCTGGGCGCCCACATCCCCCCACCGCCCT
GA

Translation (373 aa):
MDRSSLLQLIQEQQLDPENTGFIGADTFTGLVHSHELPLDPAKLDMLVALAQSNEQGQVCYQELVDLISS
KRSSSFKRAIANGQRALPRDGPLDEPGLGVYKRFVRYVAYEILPCEVDRRWYFYRHRSCPPPVFMASVTL
AQIIVFLCYGARLNKWVLQTYHPEYMKSPLVYHPGHRARAWRFLTYMFMHVGLEQLGFNALLQLMIGVPL
EMVHGLLRISLLYLAGVLAGSLTVSITDMRAPVVGGSGGVYALCSAHLANVVMNWAGMRCPYKLLRMVLA
LVCMSSEVGRAVWLRFSPPLPASGPQPSFMAHLAGAVVGVSMGLTILRSYEERLRDQCGWWVVLLAYGTF
LLFAVFWNVFAYDLLGAHIPPPP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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