NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS6136.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
6136.1 Public Homo sapiens 8 THAP1 24 110 108 CCDS HistoryNCBI Gene:55145Re-query CCDS DB by CCDS ID:6136.1Re-query CCDS DB by GeneID:55145See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 6136.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000254250.7 ENSP00000254250.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000254250.7Link to Ensembl Protein Viewer:ENSP00000254250.3Re-query CCDS DB by Nucleotide ID:ENST00000254250Re-query CCDS DB by Protein ID:ENSP00000254250
Original member Current member NCBI NM_018105.3 NP_060575.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_018105.3Link to Protein Sequence:NP_060575.1Re-query CCDS DB by Nucleotide ID:NM_018105Re-query CCDS DB by Protein ID:NP_060575Link to BLAST:NP_060575.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_060575.1 213 Q9NVV9-1 213 100% 0 0

Chromosomal Locations for CCDS 6136.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 8 (NC_000008.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 42837962 42838336 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 42839186 42839381 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 42843024 42843094 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (642 nt):
ATGGTGCAGTCCTGCTCCGCCTACGGCTGCAAGAACCGCTACGACAAGGACAAGCCCGTTTCTTTCCACA
AGTTTCCTCTTACTCGACCCAGTCTTTGTAAAGAATGGGAGGCAGCTGTCAGAAGAAAAAACTTTAAACC
CACCAAGTATAGCAGTATTTGTTCAGAGCACTTTACTCCAGACTGCTTTAAGAGAGAGTGCAACAACAAG
TTACTGAAAGAGAATGCTGTGCCCACAATATTTCTTTGTACTGAGCCACATGACAAGAAAGAAGATCTTC
TGGAGCCACAGGAACAGCTTCCCCCACCTCCTTTACCGCCTCCTGTTTCCCAGGTTGATGCTGCTATTGG
ATTACTAATGCCGCCTCTTCAGACCCCTGTTAATCTCTCAGTTTTCTGTGACCACAACTATACTGTGGAG
GATACAATGCACCAGCGGAAAAGGATTCATCAGCTAGAACAGCAAGTTGAAAAACTCAGAAAGAAGCTCA
AGACCGCACAGCAGCGATGCAGAAGGCAAGAACGGCAGCTTGAAAAATTAAAGGAGGTTGTTCACTTCCA
GAAAGAGAAAGACGACGTATCAGAAAGAGGTTATGTGATTCTACCAAATGACTACTTTGAAATAGTTGAA
GTACCAGCATAA

Translation (213 aa):
MVQSCSAYGCKNRYDKDKPVSFHKFPLTRPSLCKEWEAAVRRKNFKPTKYSSICSEHFTPDCFKRECNNK
LLKENAVPTIFLCTEPHDKKEDLLEPQEQLPPPPLPPPVSQVDAAIGLLMPPLQTPVNLSVFCDHNYTVE
DTMHQRKRIHQLEQQVEKLRKKLKTAQQRCRRQERQLEKLKEVVHFQKEKDDVSERGYVILPNDYFEIVE
VPA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH