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Report for CCDS60929.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
60929.1 Public Homo sapiens 11 TRIM77 24 110 108 CCDS HistoryNCBI Gene:390231Re-query CCDS DB by CCDS ID:60929.1Re-query CCDS DB by GeneID:390231See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 14, NCBI annotation release 105, Ensembl annotation release 73

Review status: Reviewed (by RefSeq and Havana)


Attributes
Inferred exon combination

Sequence IDs included in CCDS 60929.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000398290.7 ENSP00000474003.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000398290.7Link to Ensembl Protein Viewer:ENSP00000474003.1Re-query CCDS DB by Nucleotide ID:ENST00000398290Re-query CCDS DB by Protein ID:ENSP00000474003
Original member Current member NCBI NM_001146162.1 NP_001139634.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001146162.1Link to Protein Sequence:NP_001139634.1Re-query CCDS DB by Nucleotide ID:NM_001146162Re-query CCDS DB by Protein ID:NP_001139634Link to BLAST:NP_001139634.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001139634.1 450 I1YAP6 450 100% 0 0

Chromosomal Locations for CCDS 60929.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 89710299 89710709 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 89711410 89711505 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 89714192 89714422 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 89715158 89715180 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 89715890 89715987 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 89717379 89717872 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1353 nt):
ATGGCTTCTGCTATCACGCAGTGTTCTACCAGTGAGCTCACCTGCTCGATCTGCACAGACTATTTGACAG
ACCCTGTCACCATTTGTTGTGGGCACAGATTTTGTAGTCCCTGTCTCTGCCTCTTGTGGGAAGATACACT
AACTCCTAATTGCTGCCCTGTGTGCAGGGAAATATCACAGCAAATGTACTTCAAACGCATTATTTTTGCT
GAGAAACAAGTTATTCCTACAAGAGAATCAGTCCCCTGCCAGTTATCAAGCTCTGCCATGCTGATCTGTA
GGAGACACCAGGAAATCAAGAACCTCATCTGTGAAACTGATAGGAGCCTGCTGTGTTTTCTATGCTCTCA
ATCCCCAAGGCATGCTACTCACAAACACTATATGACAAGGGAGGCTGATGAATACTATAGGAAGAAACTC
CTGATTCAAATGAAGTCCATCTGGAAAAAAAAACAGAAAAATCAAAGAAATCTAAACAGAGAGACCAACA
TAATCGGAACATGGGAAGTTTTTATAAATTTGCGGAGCATGATGATCAGTGCTGAATATCCTAAGGTGTG
TCAATACCTCCGTGAAGAAGAGCAAAAGCACGTAGAGAGCCTGGCAAGAGAAGGCAGGATAATTTTTCAG
CAACTCAAGAGAAGTCAAACTAGAATGGCTAAGATGGGTATACTCCTGAGAGAAATGTATGAGAAACTGA
AGGAAATGAGCTGTAAAGCAGATGTGAACCTGCCTCAGGATTTGGGAGACGTAATGAAAAGGAATGAGTT
TCTGAGGCTGGCCATGCCTCAGCCTGTGAACCCACAGCTCAGTGCATGGACCATCACTGGGGTGTCAGAA
AGGCTTAACTTCTTCAGAGTGTATATCACCTTGGATCGTAAGATATGCAGTAATCACAAGCTTCTGTTCG
AAGACCTAAGGCATTTGCAGTGCAGCCTTGATGATACAGACATGTCCTGTAATCCAACAAGTACACAGTA
TACTTCTTCATGGGGAGCTCAGATCCTCAGCTCTGGCAAACATTACTGGGAGGTGGATGTGAAAGACTCT
TGTAATTGGGTTATAGGACTTTGCAGAGAAGCCTGGACAAAGAGGAATGACATGCGACTTGACTCTGAGG
GTATCTTTCTACTCCTGTGTCTCAAAGTGGATGACCATTTCAGTCTCTTCTCTACCTCCCCACTGTTACC
TCACTATATTCCAAGGCCCCAAGGCTGGCTAGGGGTGTTCCTGGATTATGAATGTGGGATAGTGAGCTTT
GTTAATGTTGCCCAAAGTTCCCTCATTTGTAGTTTCCTCTCACGCATCTTCTATTTTCCTCTCAGACCTT
TCATTTGCCACGGATCTAAATAA

Translation (450 aa):
MASAITQCSTSELTCSICTDYLTDPVTICCGHRFCSPCLCLLWEDTLTPNCCPVCREISQQMYFKRIIFA
EKQVIPTRESVPCQLSSSAMLICRRHQEIKNLICETDRSLLCFLCSQSPRHATHKHYMTREADEYYRKKL
LIQMKSIWKKKQKNQRNLNRETNIIGTWEVFINLRSMMISAEYPKVCQYLREEEQKHVESLAREGRIIFQ
QLKRSQTRMAKMGILLREMYEKLKEMSCKADVNLPQDLGDVMKRNEFLRLAMPQPVNPQLSAWTITGVSE
RLNFFRVYITLDRKICSNHKLLFEDLRHLQCSLDDTDMSCNPTSTQYTSSWGAQILSSGKHYWEVDVKDS
CNWVIGLCREAWTKRNDMRLDSEGIFLLLCLKVDDHFSLFSTSPLLPHYIPRPQGWLGVFLDYECGIVSF
VNVAQSSLICSFLSRIFYFPLRPFICHGSK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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