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Report for CCDS60215.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
60215.1 Public Homo sapiens 1 CLCC1 24 110 108 CCDS HistoryNCBI Gene:23155Re-query CCDS DB by CCDS ID:60215.1Re-query CCDS DB by GeneID:23155See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 14, NCBI annotation release 105, Ensembl annotation release 73

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 60215.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000302500.5 ENSP00000306552.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000302500.5Link to Ensembl Protein Viewer:ENSP00000306552.4Re-query CCDS DB by Nucleotide ID:ENST00000302500Re-query CCDS DB by Protein ID:ENSP00000306552
Original member Current member EBI ENST00000688610.1 ENSP00000510524.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000688610.1Link to Ensembl Protein Viewer:ENSP00000510524.1Re-query CCDS DB by Nucleotide ID:ENST00000688610Re-query CCDS DB by Protein ID:ENSP00000510524
Original member Current member NCBI NM_001278202.2 NP_001265131.1 Accepted alive Link to Nucleotide Sequence:NM_001278202.2Link to Protein Sequence:NP_001265131.1Re-query CCDS DB by Nucleotide ID:NM_001278202Re-query CCDS DB by Protein ID:NP_001265131Link to BLAST:NP_001265131.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001265131.1 430 Q96S66-3 430 100% 0 0

Chromosomal Locations for CCDS 60215.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 108934670 108934942 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 108937077 108937418 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 108939636 108939782 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 108940045 108940142 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 108941405 108941498 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 108947611 108947718 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 108949820 108949921 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 108950309 108950437 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1293 nt):
ATGCTGTGTTCTTTGCTCCTTTGTGAATGTCTGTTGCTGGTAGCTGGTTATGCTCATGATGATGACTGGA
TTGACCCCACAGACATGCTTAACTATGATGCTGCTTCAGGAACAATGAGAAAATCTCAGGCAAAATATGG
TATTTCAGGGGAAAAGGATGTCAGTCCTGACTTGTCATGTGCTGATGAAATATCAGAATGTTATCACAAA
CTTGATTCTTTAACTTATAAGATTGATGAGTGTGAAAAGAAAAAGAGGGAAGACTATGAAAGTCAAAGCA
ATCCTGTTTTTAGGAGATACTTAAATAAGATTTTAATTGAAGCTGGAAAGCTTGGACTTCTAGCTTTTGC
ACAGCATCAGGCTGAAGTCGCCAAGATGGAGCCATTAAACAATGTGTGTGCCAAAAAGATGGACTGGACT
GGAAGTATCTGGGAATGGTTTAGAAGTTCATGGACCTATAAGGATGACCCATGCCAAAAATACTATGAGC
TCTTACTAGTCAACCCTATTTGGTTGGTCCCACCAACAAAGGCACTTGCAGTTACATTCACCACATTTGT
AACGGAGCCATTGAAGCATATTGGAAAAGGAACTGGGGAATTTATTAAAGCACTCATGAAGGAAATTCCA
GCGCTGCTTCATCTTCCAGTGCTGATAATTATGGCATTAGCCATCCTGAGTTTCTGCTATGGTGCTGGAA
AATCAGTTCATGTGCTGAGACATATAGGCGGTCCTGAGAGCGAACCTCCCCAGGCACTTCGGCCACGGGA
TAGAAGACGGCAGGAGGAAATTGATTATAGACCTGATGGTGGAGCAGGTGATGCCGATTTCCATTATAGG
GGCCAAATGGGCCCCACTGAGCAAGGCCCTTATGCCAAAACGTATGAGGGTAGAAGAGAGATTTTGAGAG
AGAGAGATGTTGACTTGAGATTTCAGACTGGCAACAAGAGCCCTGAAGTGCTCCGGGCATTTGATGTACC
AGACGCAGAGGCACGAGAGCATCCCACGGTGGTACCCAGTCATAAATCACCTGTTTTGGATACAAAGCCC
AAGGAGACAGGTGGAATCCTGGGGGAAGGCACACCGAAAGAAAGCAGTACTGAAAGCAGCCAGTCGGCCA
AGCCTGTCTCTGGCCAAGACACATCAGGGAATACAGAAGGTTCACCCGCAGCGGAAAAGGCCCAGCTCAA
GTCTGAAGCCGCAGGCAGCCCAGACCAAGGCAGCACATACAGCCCCGCAAGAGGTGTGGCTGGACCACGT
GGACAGGATCCGGTCAGCAGCCCCTGTGGCTAG

Translation (430 aa):
MLCSLLLCECLLLVAGYAHDDDWIDPTDMLNYDAASGTMRKSQAKYGISGEKDVSPDLSCADEISECYHK
LDSLTYKIDECEKKKREDYESQSNPVFRRYLNKILIEAGKLGLLAFAQHQAEVAKMEPLNNVCAKKMDWT
GSIWEWFRSSWTYKDDPCQKYYELLLVNPIWLVPPTKALAVTFTTFVTEPLKHIGKGTGEFIKALMKEIP
ALLHLPVLIIMALAILSFCYGAGKSVHVLRHIGGPESEPPQALRPRDRRRQEEIDYRPDGGAGDADFHYR
GQMGPTEQGPYAKTYEGRREILRERDVDLRFQTGNKSPEVLRAFDVPDAEAREHPTVVPSHKSPVLDTKP
KETGGILGEGTPKESSTESSQSAKPVSGQDTSGNTEGSPAAEKAQLKSEAAGSPDQGSTYSPARGVAGPR
GQDPVSSPCG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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