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Report for CCDS59140.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
59140.1 Public Homo sapiens 9 PTBP3 24 110 108 CCDS HistoryNCBI Gene:9991Re-query CCDS DB by CCDS ID:59140.1Re-query CCDS DB by GeneID:9991See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 11, NCBI annotation release 103, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 59140.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000343327.6 ENSP00000340705.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000343327.6Link to Ensembl Protein Viewer:ENSP00000340705.2Re-query CCDS DB by Nucleotide ID:ENST00000343327Re-query CCDS DB by Protein ID:ENSP00000340705
Original member Current member NCBI NM_001244896.2 NP_001231825.1 Accepted alive Link to Nucleotide Sequence:NM_001244896.2Link to Protein Sequence:NP_001231825.1Re-query CCDS DB by Nucleotide ID:NM_001244896Re-query CCDS DB by Protein ID:NP_001231825Link to BLAST:NP_001231825.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001231825.1 457 O95758-7 457 100% 0 0

Chromosomal Locations for CCDS 59140.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 9 (NC_000009.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 112223851 112223983 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 112224133 112224210 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 112227411 112227627 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 112228380 112228472 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 112231380 112231413 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 112232099 112232238 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 112234820 112234897 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 112250929 112251103 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 112252678 112252788 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 112262435 112262599 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 112268049 112268195 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 112297832 112297834 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1374 nt):
ATGGCTTTCTTAGAAATGGCTTCTGAGGAAGCTGCCGTTACTATGGTGAATTATTACACTCCTATTACTC
CTCACCTTCGAAGCCAGCCTGTTTATATTCAGTATTCCAATCACAGAGAACTTAAGACTGACAATCTACC
TAATCAAGCTCGAGCCCAAGCTGCACTGCAGGCTGTCAGTGCCGTCCAATCAGGAAGCCTGGCCCTTTCT
GGAGGTCCTTCCAATGAAGGCACAGTCCTACCTGGGCAGAGCCCTGTGCTTCGAATAATTATTGAAAACC
TCTTTTACCCTGTTACCCTGGAAGTTCTTCATCAGATATTTTCTAAATTTGGCACAGTCTTGAAGATTAT
CACCTTTACAAAGAATAATCAGTTTCAAGCCTTGCTTCAGTATGCTGACCCAGTAAATGCACATTATGCC
AAAATGGCTCTGGATGGCCAGAATATCTATAATGCATGCTGCACTCTGCGCATTGACTTCTCCAAGCTCA
CCAGCCTTAATGTGAAATATAATAATGACAAAAGCAGAGACTTCACTCGCTTAGACCTTCCTACTGGTGA
TGGCCAGCCATCCCTTGAACCCCCTATGGCTGCTGCTTTTGGTGCACCGGGTATAATTTCTTCACCATAT
GCAGGGGCTGCTGGATTTGCCCCAGCCATTGGATTTCCTCAAGCTACAGGTCTATCAGTTCCAGCTGTTC
CTGGAGCTCTTGGTCCTCTCACAATCACCTCTTCTGCTGTCACTGGAAGGATGGCCATTCCTGGGGCTAG
TGGTATACCAGGAAATTCTGTTCTACTCGTCACAAATCTCAATCCTGATCTTATCACACCACATGGGCTT
TTTATCCTATTTGGAGTCTATGGTGATGTACATCGAGTGAAGATTATGTTTAATAAGAAAGAAAATGCCT
TGGTTCAGATGGCGGATGCAAATCAAGCTCAGCTAGCAATGAACCATCTAAGTGGTCAGAGACTTTATGG
GAAAGTGCTTCGTGCTACACTGTCCAAACATCAAGCAGTACAGCTTCCTCGAGAGGGACAAGAAGACCAA
GGTCTGACTAAGGATTTCAGCAATAGTCCTTTGCATCGCTTTAAAAAGCCGGGCTCTAAAAACTTCCAGA
ATATCTTTCCACCATCAGCCACTCTGCATCTTTCCAACATTCCCCCTTCTGTTACAGTGGATGATCTGAA
GAACCTTTTCATAGAAGCTGGATGTTCAGTGAAGGCTTTTAAATTCTTTCAGAAAGATCGCAAAATGGCG
CTCATTCAATTGGGATCTGTGGAAGAAGCAATTCAGGCCCTCATTGAGCTTCATAACCATGACCTTGGAG
AAAATCACCACCTCAGAGTTTCCTTCTCAAAATCTACAATCTGA

Translation (457 aa):
MAFLEMASEEAAVTMVNYYTPITPHLRSQPVYIQYSNHRELKTDNLPNQARAQAALQAVSAVQSGSLALS
GGPSNEGTVLPGQSPVLRIIIENLFYPVTLEVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVNAHYA
KMALDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDFTRLDLPTGDGQPSLEPPMAAAFGAPGIISSPY
AGAAGFAPAIGFPQATGLSVPAVPGALGPLTITSSAVTGRMAIPGASGIPGNSVLLVTNLNPDLITPHGL
FILFGVYGDVHRVKIMFNKKENALVQMADANQAQLAMNHLSGQRLYGKVLRATLSKHQAVQLPREGQEDQ
GLTKDFSNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVTVDDLKNLFIEAGCSVKAFKFFQKDRKMA
LIQLGSVEEAIQALIELHNHDLGENHHLRVSFSKSTI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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