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Report for CCDS58831.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
58831.1 Public Homo sapiens 3 C3orf84 24 110 108 CCDS HistoryNCBI Gene:646498Re-query CCDS DB by CCDS ID:58831.1Re-query CCDS DB by GeneID:646498See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 11, NCBI annotation release 103, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 58831.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000545770.7 ENSP00000454903.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000545770.7Link to Ensembl Protein Viewer:ENSP00000454903.1Re-query CCDS DB by Nucleotide ID:ENST00000545770Re-query CCDS DB by Protein ID:ENSP00000454903
Original member Current member NCBI NM_001080528.3 NP_001073997.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001080528.3Link to Protein Sequence:NP_001073997.2Re-query CCDS DB by Nucleotide ID:NM_001080528Re-query CCDS DB by Protein ID:NP_001073997Link to BLAST:NP_001073997.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001073997.2 204 H3BNL1 204 100% 0 0

Chromosomal Locations for CCDS 58831.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 49177636 49178052 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 49178482 49178538 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 49190025 49190138 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 49191745 49191771 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (615 nt):
ATGCAAAGTGCTTTAGTAGGCTCCTGGCACAACAATGGCTTCTATGGGCACTACAGAAGCCAATTCAAGA
GTGAAAGTGCTAGAGAATACCACCTTGCAGCCAAGCCCCAGCCTCCAGCAGTGTTCCTGCAGCGATGTCA
GGAGCCGGCGCAGCGACACTTCTTCTCCAAGCACGACAACCGTACTTCCTTTGACAAAGGTCCCTATTGC
CTGCTGCAGGGAATCGGAAGGCGGAAGGACCTGGAGCGCCTGTGGCAGCGGCACACCTTCCTGCGCTGGG
CACCCTGTGAGATAGAGTTGCGCCAGCAGGGGCCCCTGGAATCTTCTTACCAGGCTGATTTCAGGCCAGG
CCCAGGACTCAGTGGCCTCCCCCAGCACCTCATCCACTTTGTGCAGGTCCAGCCTTCCCATACCAGGACC
ACCTACCAGCAGAACTTCTGCTGCCCATCCCAGGGTGGCCACTATGGCAGCTACAAGGTAGGGCCCCAGG
CGCCGGTCACTGACGTACTGCCTGACCTCCCAGGGATCCCAAGACCCAAGCTGCTGCAGCACTACCTTCA
TGCTGGGGTCTCTGAGTGTCTAAACTGGTCCAGAGCATTAAACAAGGACAGCTGA

Translation (204 aa):
MQSALVGSWHNNGFYGHYRSQFKSESAREYHLAAKPQPPAVFLQRCQEPAQRHFFSKHDNRTSFDKGPYC
LLQGIGRRKDLERLWQRHTFLRWAPCEIELRQQGPLESSYQADFRPGPGLSGLPQHLIHFVQVQPSHTRT
TYQQNFCCPSQGGHYGSYKVGPQAPVTDVLPDLPGIPRPKLLQHYLHAGVSECLNWSRALNKDS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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