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Report for CCDS58533.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
58533.1 Public Homo sapiens 17 IFT20 24 110 108 CCDS HistoryNCBI Gene:90410Re-query CCDS DB by CCDS ID:58533.1Re-query CCDS DB by GeneID:90410See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 11, NCBI annotation release 103, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 58533.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000579419.5 ENSP00000463322.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000579419.5Link to Ensembl Protein Viewer:ENSP00000463322.1Re-query CCDS DB by Nucleotide ID:ENST00000579419Re-query CCDS DB by Protein ID:ENSP00000463322
Original member Current member NCBI NM_001267777.2 NP_001254706.1 Accepted alive Link to Nucleotide Sequence:NM_001267777.2Link to Protein Sequence:NP_001254706.1Re-query CCDS DB by Nucleotide ID:NM_001267777Re-query CCDS DB by Protein ID:NP_001254706Link to BLAST:NP_001254706.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001254706.1 114 Q8IY31-4 114 100% 0 0

Chromosomal Locations for CCDS 58533.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 28328630 28328657 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 28329173 28329276 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 28330443 28330528 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 28331859 28331985 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (345 nt):
ATGGCCAAGGACATCCTGGGTGAAGCAGGGCTACACTTTGATGAACTGAACAAGCTGAGGGTGTTGGACC
CAGAGGTTACCCAGCAGACCATAGAGCTGAAGGAAGAGTGCAAAGACTTTGTGGACAAAATTGGCCAGTT
TCAGAAAATAGTTGGTGGTTTAATTGAGCTTGTTGATCAACTTGCAAAAGAAGCAGAAAATGAAAAGATG
AAGGCCATCGGTGCTCGGAACTTGCTCAAATCTATAGCAAAGCAGAGAGAAGCTCAACAGCAGCAACTTC
AAGCCCTAATAGCAGAAAAGAAAATGCAGCTAGAAAGAAATGAACTGAAAATTTCGCTTTTATAG

Translation (114 aa):
MAKDILGEAGLHFDELNKLRVLDPEVTQQTIELKEECKDFVDKIGQFQKIVGGLIELVDQLAKEAENEKM
KAIGARNLLKSIAKQREAQQQQLQALIAEKKMQLERNELKISLL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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