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Report for CCDS57720.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
57720.1 Public Mus musculus X Btbd35f23 23 108 98 CCDS HistoryNCBI Gene:100861966Re-query CCDS DB by CCDS ID:57720.1Re-query CCDS DB by GeneID:100861966See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 57720.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000189190.1 ENSMUSP00000140013.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000189190.1Link to Ensembl Protein Viewer:ENSMUSP00000140013.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000189190Re-query CCDS DB by Protein ID:ENSMUSP00000140013
Original member Current member NCBI NM_001270667.1 NP_001257596.1 Accepted alive Link to Nucleotide Sequence:NM_001270667.1Link to Protein Sequence:NP_001257596.1Re-query CCDS DB by Nucleotide ID:NM_001270667Re-query CCDS DB by Protein ID:NP_001257596Link to BLAST:NP_001257596.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001257596.1 498 Q99N64 498 98.5944% 0 7

Chromosomal Locations for CCDS 57720.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 3076960 3078456 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1497 nt):
ATGGGGCTTTTAGTCAGCAGGGTCTTGAGATGCAGGGATTCCAGTCTGTTAGAGCCACAGCCAGAAGGCA
TAGCCGGAGCCAGCTACATTCCTGTCAGTCGCAAGCGAAAAAGAAACAGTTTGGAGGAGTTGGCAACAAG
TTCTAATGTTCATGGACCTCAAAACCAGGGAATGTATCCACATCAAGTTCTCAACTACATCTACTGGAAA
AGGGTTAAGATCTCATCTAATGATGCTTATCAAAACTTATTTTTGGACGGGCATGATAGCGACATTAAAA
TCCGTGCTCTGGGAAGAACATGGTGTTTACACAAAGTATTTTTATGTCAGTCAGGCTACTTTACTAACAT
TCTCAAAGGTACTTGGAGAGAATCACACCATGGTGTTATAAATCTGATCATTAAGAATGAGGATATTGAT
ACCCGATCTCTGCATTTTGTGTTTGGTGCTTTGTACACGGATGCGGATTTGTCAATAACACCTCTGGAAG
TTCCTCAAGTTTTGGCAGCAGCATGCCTGCTTCGGGTGGATCGAGTAATTCAGAAGTGTGAAGGAATCAT
GAAAGAAACTATCAACAGGAACACTGTGTGCTCCTATTATTTGGCAGCAGAAACCTATAGATTAAAAGCT
GTAAAGACGAGATGCTTTGAATGGCTTCTTTGCAATTTGATGGTACATCCAAGTGTGGCACTTTACAAGG
AAGTAGATTTGAAGTTGATGTATCTTCTAGCACTGTCTTCTGACTTACTAGTCATGCAAAAGGAGATTGA
TGTATATACCACACTAAAAATATGGATGTTCCTTTATCTTAATCCATGCTGGAACGGAACCATGAAACAG
CTTTTACAACACGCAAACAACTGGCTTTCCACCCACATGGCATATGTTGATAACATCAGTTTTCTTGAAA
GTGAAGAAGGACTAATATTTCAACCCGTGTTTAAAAAGCTGAGATTTCAGCACATCATCTGTAACTTGAC
TTCCACAACTATTCTTGAACAAGATCGACTAATACCTATGGCATGGTTGTCACCCATTTACAAACAACAG
TGGTTGACTTTGCTGCGAACACAAGAATATGGGGTAATTGGACCACAAGTTATCAATGAACAAGAACTTG
AAGAATGCACCATGAGGTGTGGTACAATGATCCCCAAAGATGGAAGATATACTTGGAAGTGGTCAGTTGG
ACGACTTGGCTTTCCTTTACGCGTGACCTTTACCAGGCAGTGTGTAATTTTAAGGCAACGGTGTCAGAGG
TGTGATGGTTCTGCTTGCCACAACCATATCCGAAATGTCATATTCAGAATAACTTTGGTGTGTTTTGATT
CCAACAAAAGAGTAACTTTCAGAAAGACAACAGGTTATAAAATCCTCACCTTTGAATATAACCAGGAGCA
AATTGTAATGAAATTGGATAGTGATGTTCTAACCTTCCCTATGTGTATATTCTGCAATTTCCTTTTTGTA
AACCTAGGAAATGCAGAAAACAAGTAA

Translation (498 aa):
MGLLVSRVLRCRDSSLLEPQPEGIAGASYIPVSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWK
RVKISSNDAYQNLFLDGHDSDIKIRALGRTWCLHKVFLCQSGYFTNILKGTWRESHHGVINLIIKNEDID
TRSLHFVFGALYTDADLSITPLEVPQVLAAACLLRVDRVIQKCEGIMKETINRNTVCSYYLAAETYRLKA
VKTRCFEWLLCNLMVHPSVALYKEVDLKLMYLLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQ
LLQHANNWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIICNLTSTTILEQDRLIPMAWLSPIYKQQ
WLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQR
CDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYNQEQIVMKLDSDVLTFPMCIFCNFLFV
NLGNAENK


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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