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Report for CCDS57638.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
57638.1 Public Mus musculus 8 Hsf4 23 108 98 CCDS HistoryNCBI Gene:26386Re-query CCDS DB by CCDS ID:57638.1Re-query CCDS DB by GeneID:26386See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 57638.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000173859.1 ENSMUSP00000134213.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000173859.1Link to Ensembl Protein Viewer:ENSMUSP00000134213.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000173859Re-query CCDS DB by Protein ID:ENSMUSP00000134213
Original member Current member NCBI NM_011939.3 NP_036069.1 Accepted alive Link to Nucleotide Sequence:NM_011939.3Link to Protein Sequence:NP_036069.1Re-query CCDS DB by Nucleotide ID:NM_011939Re-query CCDS DB by Protein ID:NP_036069Link to BLAST:NP_036069.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_036069.1 462 Q9R0L1-2 462 100% 0 0

Chromosomal Locations for CCDS 57638.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 105269874 105269996 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 105270547 105270655 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 105270769 105270896 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 105270988 105271112 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 105271374 105271449 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 105271585 105271649 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 105272106 105272208 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 105272446 105272584 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 105272810 105272933 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 105274646 105274751 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 105274848 105274913 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 105275043 105275112 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 105275504 105275658 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1389 nt):
ATGCAGGAAGCGCCAGCTGCGCTGCCCACGGAGCCAGGCCCCAGCCCGGTACCTGCCTTCCTCGGCAAGC
TATGGGCGCTGGTAGGCGACCCAGGCACCGACCACCTCATCCGCTGGAGCCCGAGTGGCACCAGCTTCCT
CGTAAGTGATCAGAGCCGCTTCGCCAAGGAAGTGCTGCCCCAGTACTTCAAGCACAGCAACATGGCGAGC
TTTGTTCGCCAACTCAACATGTATGGTTTTCGGAAGGTGGTGAGCATCGAGCAAGGTGGCCTGCTCAGAC
CAGAGCGTGACCACGTTGAGTTTCAGCATCCGAGCTTCGTGCGAGGCCGCGAGCAGCTACTGGAGCGCGT
GCGCCGCAAGGTACCTGCGCTGCGAGGCGATGACAGTCGATGGCGTCCGGAAGACCTGAGCCGACTGCTG
GGAGAGGTGCAAGCTTTGAGAGGAGTGCAGGAGAGCACGGAGGCACGGCTGCAGGAACTCAGGCAGCAGA
ACGAGATCTTGTGGCGAGAGGTGGTAACTTTGCGGCAGAGCCACAGTCAGCAGCACCGGGTCATCGGCAA
GCTAATCCAGTGCCTGTTTGGGCCACTTCAGACAGGGCCCAGCAGTACAGGAGCCAAGAGAAAACTGTCC
CTAATGCTAGATGAGGGGAGCGCCTGTTCAGCATCTGCCAAATTCAATGCCTGCCCTGTGTCTGGTGCTC
TCCTCCAGGACCCCTACTTTATCCAGTCGCCTTCTCCTTGCAGCCCCTCCCAGAGACCACGTTGGGCCTC
AGCCCTCACAGGGCCAGAGGGCCCATCATCTCTGACATCCCAGAAGATTCTCCATCTCCTGAAGGACACA
GGCTTTCTCCCTCCGGTGGTTGCAGGAGCACCCCCACCGCTGCCCGTGGCTGTGGTGCAGGCCATCCTGG
AAGGGAAAGGGAGCTACAGCCCTGAGGGGCCCAGGAGTGTACAACAGCCTGAACCAAGGGGCCCCAGGGA
GGTACCTGACAGGGGAACTCTGGGCCTGGATCGGGGTAACCGGAGCCCAGAGAGTCTGCTACCCCCAATG
CTGCTTCGGCCTGCCCCTGAAACTCTGGAGCCCGTGGCACCTGTGGATGTGCTCGGCCCTAGCCTGCATG
GACGAGAATGGACCTTGATGGATCTGGACATGGAGTTGTCTCTGATGCAGCCCTTGGCACCAGAGACGGA
TGAAGCAGAGCTGACGGTCAAGGAGTTGAATTCTTCTGGTGTAGGGAAAGACCACACACTGGGAACTCCA
CTCATGCTAGATGTCCAGGCGGATTTGGAGGGTGCAGCCCTGTCTGTGCCTGGGGCTTTAACCCTGTACA
ACGTCACCGAGAGCAACGCCTCCTACTTGGATCCTGGAGCCAGTCCCTCCTCTCCCTGA

Translation (462 aa):
MQEAPAALPTEPGPSPVPAFLGKLWALVGDPGTDHLIRWSPSGTSFLVSDQSRFAKEVLPQYFKHSNMAS
FVRQLNMYGFRKVVSIEQGGLLRPERDHVEFQHPSFVRGREQLLERVRRKVPALRGDDSRWRPEDLSRLL
GEVQALRGVQESTEARLQELRQQNEILWREVVTLRQSHSQQHRVIGKLIQCLFGPLQTGPSSTGAKRKLS
LMLDEGSACSASAKFNACPVSGALLQDPYFIQSPSPCSPSQRPRWASALTGPEGPSSLTSQKILHLLKDT
GFLPPVVAGAPPPLPVAVVQAILEGKGSYSPEGPRSVQQPEPRGPREVPDRGTLGLDRGNRSPESLLPPM
LLRPAPETLEPVAPVDVLGPSLHGREWTLMDLDMELSLMQPLAPETDEAELTVKELNSSGVGKDHTLGTP
LMLDVQADLEGAALSVPGALTLYNVTESNASYLDPGASPSSP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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